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Calcineurin-like metallo-phosphoesterase superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830957, updated on 18-Sep-2024

Summary

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Official Full Name
Calcineurin-like metallo-phosphoesterase superfamily protein
Primary source
TAIR:AT5G10900
Locus tag
AT5G10900
See related
Araport:AT5G10900
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T30N20.170; T30N20_170
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Genomic context

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Location:
chromosome: 5
Exon count:
11
Sequence:
Chromosome: 5; NC_003076.8 (3435949..3439384, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene chorismate mutase 2 Neighboring gene tRNA synthetase-related / tRNA ligase-like protein Neighboring gene myosin heavy chain-like protein Neighboring gene mraW methylase family protein Neighboring gene L-Aspartase-like family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Extrachloroplastic PP7L Functions in Chloroplast Development and Abiotic Stress Tolerance. Xu D, et al. Plant Physiol, 2019 May. PMID 30760637, Free PMC Article
  2. PP7L is essential for MAIL1-mediated transposable element silencing and primary root growth. de Luxán-Hernández C, et al. Plant J, 2020 May. PMID 31849124
  3. The plant mobile domain proteins MAIN and MAIL1 interact with the phosphatase PP7L to regulate gene expression and silence transposable elements in Arabidopsis thaliana. Nicolau M, et al. PLoS Genet, 2020 Apr. PMID 32287271, Free PMC Article
  4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The plant mobile domain proteins MAIN and MAIL1 interact with the phosphatase PP7L to regulate gene expression and silence transposable elements in Arabidopsis thaliana
    Title: The plant mobile domain proteins MAIN and MAIL1 interact with the phosphatase PP7L to regulate gene expression and silence transposable elements in Arabidopsis thaliana.
  2. AT5G10900 (PP7L) is localized to the nucleus and the cytosol.PP7L is a positive regulator of photosynthesis at young developmental stages.PP7L is involved in the regulation of chloroplast gene expression.
    Title: Extrachloroplastic PP7L Functions in Chloroplast Development and Abiotic Stress Tolerance.
Submit: New GeneRIF Correction

General gene information

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NM_001343142.1
NM_121128.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within plastid translation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Calcineurin-like metallo-phosphoesterase superfamily protein
NP_196651.1
  • Calcineurin-like metallo-phosphoesterase superfamily protein; FUNCTIONS IN: hydrolase activity, protein serine/threonine phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: serine/threonine phosphatase 7 (TAIR:AT5G63870.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    3435949..3439384 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001343141.1 → NP_001331691.1  Calcineurin-like metallo-phosphoesterase superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BEM8, A0A654G018

  2. NM_121128.4 → NP_196651.1  Calcineurin-like metallo-phosphoesterase superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_196651.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LEV0
    UniProtKB/TrEMBL
    A0A178UDB8
    Conserved Domains (2) summary
    smart00156
    Location:191 → 500
    PP2Ac; Protein phosphatase 2A homologues, catalytic domain
    cl13995
    Location:157 → 507
    MPP_superfamily; metallophosphatase superfamily, metallophosphatase domain

  3. NM_001343142.1 → NP_001331692.1  Calcineurin-like metallo-phosphoesterase superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BEP8, A0A654G018
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LEV0.1

Gene LinkOut

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