U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

CYCD4;2 cyclin d4;2 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830908, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
CYCD4;2
Official Full Name
cyclin d4;2
Primary source
TAIR:AT5G10440
Locus tag
AT5G10440
See related
Araport:AT5G10440
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
cyclin d4;2; F12B17.210; F12B17_210
Summary
Encodes a cyclin involved in cell proliferation during stomatal cell lineage development.
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See CYCD4;2 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
6
Sequence:
Chromosome: 5; NC_003076.8 (3280487..3282553, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ENTH/ANTH/VHS superfamily protein Neighboring gene MATE efflux family protein Neighboring gene uncharacterized protein Neighboring gene arabinogalactan protein 4 Neighboring gene G-box regulating factor 6 Neighboring gene tRNA-Ser

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The Arabidopsis D-type cyclin CYCD4 controls cell division in the stomatal lineage of the hypocotyl epidermis. Kono A, et al. Plant Cell, 2007 Apr. PMID 17449809, Free PMC Article
  2. A distinct type of cyclin D, CYCD4;2, involved in the activation of cell division in Arabidopsis. Kono A, et al. Plant Cell Rep, 2006 Jun. PMID 16408177
  3. An improved toolbox to unravel the plant cellular machinery by tandem affinity purification of Arabidopsis protein complexes. Van Leene J, et al. Nat Protoc, 2015 Jan. PMID 25521792
  4. Systematic localization of the Arabidopsis core cell cycle proteins reveals novel cell division complexes. Boruc J, et al. Plant Physiol, 2010 Feb. PMID 20018602, Free PMC Article
  5. A tandem affinity purification-based technology platform to study the cell cycle interactome in Arabidopsis thaliana. Van Leene J, et al. Mol Cell Proteomics, 2007 Jul. PMID 17426018

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help
NM_001343114.1
NM_121082.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within stomatal lineage progression IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
cyclin d4;2
NP_196606.3
  • cyclin d4;2 (CYCD4;2); CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin D (InterPro:IPR015451), Cyclin-like (InterPro:IPR011028), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYCLIN D4;1 (TAIR:AT5G65420.1); Has 2823 Blast hits to 2820 proteins in 293 species: Archae - 0; Bacteria - 0; Metazoa - 1255; Fungi - 334; Plants - 962; Viruses - 9; Other Eukaryotes - 263 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    3280487..3282553 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_121082.5 → NP_196606.3  cyclin d4;2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_196606.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WQN9, Q6NKU1, Q9LX96
    UniProtKB/TrEMBL
    A0A5S9Y571
    Conserved Domains (2) summary
    pfam00134
    Location:37 → 169
    Cyclin_N; Cyclin, N-terminal domain
    pfam02984
    Location:171 → 281
    Cyclin_C; Cyclin, C-terminal domain

  2. NM_001343114.1 → NP_001332308.1  cyclin d4;2 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BGJ6
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q0WQN9.2

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools