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MEF7 Tetratricopeptide repeat (TPR)-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830856, updated on 18-Sep-2024

Summary

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Official Symbol
MEF7
Official Full Name
Tetratricopeptide repeat (TPR)-like superfamily protein
Primary source
TAIR:AT5G09950
Locus tag
AT5G09950
See related
Araport:AT5G09950
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
mitochondrial editing factor 7; MYH9.16; MYH9_16
Summary
Encodes a DYW-class PPR protein required for RNA editing at four sites in mitochondria of A. thaliana.
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Genomic context

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See MEF7 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
5
Sequence:
Chromosome: 5; NC_003076.8 (3102195..3105950, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene RNA polymerase II, Rpb4, core protein Neighboring gene ABC transporter family protein Neighboring gene hypothetical protein (DUF1635) Neighboring gene sorbin/SH3 domain protein Neighboring gene cytochrome P450, family 78, subfamily A, polypeptide 7

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The DYW-class PPR protein MEF7 is required for RNA editing at four sites in mitochondria of Arabidopsis thaliana. Zehrmann A, et al. RNA Biol, 2012 Feb. PMID 22258224
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within RNA modification IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Tetratricopeptide repeat (TPR)-like superfamily protein
NP_001318522.1
  • Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G16480.1); Has 58090 Blast hits to 13690 proteins in 227 species: Archae - 0; Bacteria - 7; Metazoa - 25; Fungi - 46; Plants - 57493; Viruses - 0; Other Eukaryotes - 519 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    3102195..3105950 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001343079.1 → NP_001318522.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FIB2
    UniProtKB/TrEMBL
    A0A178UME2

  2. NM_001343080.1 → NP_001330962.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BCH0, A0A7G2FBJ0

  3. NM_121032.1 → NP_196557.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_196557.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FIB2
    UniProtKB/TrEMBL
    A0A178UME2
    Conserved Domains (4) summary
    sd00004
    Location:687 → 714
    PPR; PPR repeat [structural motif]
    pfam01535
    Location:686 → 715
    PPR; PPR repeat
    pfam13041
    Location:684 → 733
    PPR_2; PPR repeat family
    pfam14432
    Location:861 → 984
    DYW_deaminase; DYW family of nucleic acid deaminases
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FIB2.1

Gene LinkOut

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