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ABCF2 ABC transporter family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830854, updated on 18-Sep-2024

Summary

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Official Symbol
ABCF2
Official Full Name
ABC transporter family protein
Primary source
TAIR:AT5G09930
Locus tag
AT5G09930
See related
Araport:AT5G09930
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 2; ATGCN2; ATP-binding cassette F2; GENERAL CONTROL NON-REPRESSIBLE 2; MYH9.14; MYH9_14
Summary
member of GCN subfamily
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Genomic context

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See ABCF2 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
8
Sequence:
Chromosome: 5; NC_003076.8 (3097555..3100291, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene 26S proteasome regulatory subunit, putative (RPN5) Neighboring gene Ras-related small GTP-binding family protein Neighboring gene ncRNA Neighboring gene RNA polymerase II, Rpb4, core protein Neighboring gene hypothetical protein (DUF1635) Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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NM_121030.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
  
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
ABC transporter family protein
NP_196555.2
  • GENERAL CONTROL NON-REPRESSIBLE 2 (GCN2); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: general control non-repressible 5 (TAIR:AT5G64840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    3097555..3100291 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_121030.3 → NP_196555.2  ABC transporter family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_196555.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FIB4
    UniProtKB/TrEMBL
    A0A178UHM9
    Conserved Domains (3) summary
    cd03221
    Location:411 → 603
    ABCF_EF-3; ATP-binding cassette domain of elongation factor 3, subfamily F
    COG0488
    Location:85 → 617
    Uup; ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
    pfam12848
    Location:313 → 400
    ABC_tran_Xtn; ABC transporter
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FIB4.2

Gene LinkOut

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