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Splicing factor, CC1-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830848, updated on 18-Sep-2024

Summary

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Official Full Name
Splicing factor, CC1-like protein
Primary source
TAIR:AT5G09880
Locus tag
AT5G09880
See related
Araport:AT5G09880
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MYH9.9; MYH9_9
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Genomic context

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Location:
chromosome: 5
Exon count:
13
Sequence:
Chromosome: 5; NC_003076.8 (3081389..3085291, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene cellulose synthase 5 Neighboring gene uncharacterized protein Neighboring gene Protein kinase family protein Neighboring gene 26S proteasome regulatory subunit, putative (RPN5) Neighboring gene Ras-related small GTP-binding family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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NM_121025.4

Gene Ontology Provided by TAIR

Process Evidence Code Pubs
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Splicing factor, CC1-like protein
NP_568220.1
  • Splicing factor, CC1-like; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: mRNA processing; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Splicing factor, CC1-like (InterPro:IPR006509), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: Splicing factor, CC1-like (TAIR:AT2G16940.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    3081389..3085291 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_121025.4 → NP_568220.1  Splicing factor, CC1-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_568220.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9Y3M9, A0A654FZZ2, Q93Y25
    Conserved Domains (5) summary
    cd12283
    Location:169 → 241
    RRM1_RBM39_like; RNA recognition motif 1 in vertebrate RNA-binding protein 39 (RBM39) and similar proteins
    cd12284
    Location:267 → 340
    RRM2_RBM23_RBM39; RNA recognition motif 2 in vertebrate RNA-binding protein RBM23, RBM39 and similar proteins
    cd12285
    Location:434 → 517
    RRM3_RBM39_like; RNA recognition motif 3 in vertebrate RNA-binding protein 39 (RBM39) and similar proteins
    TIGR01622
    Location:85 → 517
    SF-CC1; splicing factor, CC1-like family
    pfam15519
    Location:366 → 452
    RBM39linker; linker between RRM2 and RRM3 domains in RBM39 protein
Nucleotide Protein
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