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Transcription elongation factor (TFIIS) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830845, updated on 18-Sep-2024

Summary

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Official Full Name
Transcription elongation factor (TFIIS) family protein
Primary source
TAIR:AT5G09850
Locus tag
AT5G09850
See related
Araport:AT5G09850
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MYH9.6; MYH9_6
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Genomic context

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Location:
chromosome: 5
Exon count:
10
Sequence:
Chromosome: 5; NC_003076.8 (3062651..3065889, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene BolA-like family protein Neighboring gene Putative endonuclease or glycosyl hydrolase Neighboring gene nuclear matrix protein-like protein Neighboring gene cellulose synthase 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001343072.1
NM_001343073.1
NM_001343074.1
NM_121022.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Transcription elongation factor (TFIIS) family protein
NP_568218.1
  • Transcription elongation factor (TFIIS) family protein; FUNCTIONS IN: transcription regulator activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor IIS, N-terminal (InterPro:IPR017923), Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type (InterPro:IPR003617), Transcription elongation factor, TFIIS/elongin A/CRSP70, N-terminal (InterPro:IPR010990); BEST Arabidopsis thaliana protein match is: Transcription elongation factor (TFIIS) family protein (TAIR:AT5G05140.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    3062651..3065889 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001343071.1 → NP_001331544.1  Transcription elongation factor (TFIIS) family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4KFC7, Q93Z47, Q9FIC1
    UniProtKB/TrEMBL
    A0A5S9Y3I4, A0A654G054, A0A7G2F8E3
    Conserved Domains (3) summary
    PLN02226
    Location:203 → 316
    PLN02226; 2-oxoglutarate dehydrogenase E2 component
    PHA03247
    Location:257 → 303
    PHA03247; large tegument protein UL36; Provisional
    cd00183
    Location:124 → 197
    TFIIS_I; N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme

  2. NM_121022.3 → NP_568218.1  Transcription elongation factor (TFIIS) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_568218.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4KFC7, Q93Z47, Q9FIC1
    UniProtKB/TrEMBL
    A0A5S9Y3I4, A0A654G054, A0A7G2F8E3
    Conserved Domains (3) summary
    PLN02226
    Location:203 → 316
    PLN02226; 2-oxoglutarate dehydrogenase E2 component
    PHA03247
    Location:257 → 303
    PHA03247; large tegument protein UL36; Provisional
    cd00183
    Location:124 → 197
    TFIIS_I; N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme

  3. NM_001343072.1 → NP_001331545.1  Transcription elongation factor (TFIIS) family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BE77, A0A7G2F8E3

  4. NM_001343073.1 → NP_001331542.1  Transcription elongation factor (TFIIS) family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4KFC7, Q93Z47, Q9FIC1
    UniProtKB/TrEMBL
    A0A5S9Y3I4, A0A654G054, A0A7G2F8E3
    Conserved Domains (3) summary
    PLN02226
    Location:203 → 316
    PLN02226; 2-oxoglutarate dehydrogenase E2 component
    PHA03247
    Location:257 → 303
    PHA03247; large tegument protein UL36; Provisional
    cd00183
    Location:124 → 197
    TFIIS_I; N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme

  5. NM_001343074.1 → NP_001331543.1  Transcription elongation factor (TFIIS) family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4KFC7, Q93Z47, Q9FIC1
    UniProtKB/TrEMBL
    A0A5S9Y3I4, A0A654G054, A0A7G2F8E3
    Conserved Domains (3) summary
    PLN02226
    Location:203 → 316
    PLN02226; 2-oxoglutarate dehydrogenase E2 component
    PHA03247
    Location:257 → 303
    PHA03247; large tegument protein UL36; Provisional
    cd00183
    Location:124 → 197
    TFIIS_I; N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F4KFC7.1

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