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Glycosyl hydrolase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830829, updated on 18-Sep-2024

Summary

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Official Full Name
Glycosyl hydrolase family protein
Primary source
TAIR:AT5G09700
Locus tag
AT5G09700
See related
Araport:AT5G09700
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F17I14.110; F17I14_110
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Genomic context

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Location:
chromosome: 5
Exon count:
4
Sequence:
Chromosome: 5; NC_003076.8 (3003666..3005587, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene loricrin-like protein Neighboring gene reduced lateral root formation Neighboring gene magnesium transporter 7 Neighboring gene miscRNA Neighboring gene uncharacterized protein Neighboring gene Magnesium transporter CorA-like family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A high-resolution map of Arabidopsis recombinant inbred lines by whole-genome exon array hybridization. Singer T, et al. PLoS Genet, 2006 Sep 15. PMID 17044735, Free PMC Article
  2. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
  3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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NM_121007.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables xylan 1,4-beta-xylosidase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in xylan catabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytosol HDA PubMed 

General protein information

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Preferred Names
Glycosyl hydrolase family protein
NP_196532.2
  • Glycosyl hydrolase family protein; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: beta-xylosidase 3 (TAIR:AT5G09730.1).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    3003666..3005587 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_121007.3 → NP_196532.2  Glycosyl hydrolase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_196532.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4KE06
    Conserved Domains (2) summary
    pfam01915
    Location:155 → 342
    Glyco_hydro_3_C; Glycosyl hydrolase family 3 C-terminal domain
    pfam14310
    Location:450 → 517
    Fn3-like; Fibronectin type III-like domain
Nucleotide Protein
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