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SDH3-1 succinate dehydrogenase 3-1 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830819, updated on 18-Sep-2024

Summary

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Official Symbol
SDH3-1
Official Full Name
succinate dehydrogenase 3-1
Primary source
TAIR:AT5G09600
Locus tag
AT5G09600
See related
Araport:AT5G09600
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F17I14.210; F17I14_210; succinate dehydrogenase 3-1
Summary
Encodes one of the membrane anchor subunits of the mitochondrial respiratory complex II. The protein is encoded by the nuclear genome but is imported into the mitochondrion. There are two genes that encode this protein, the other is SDH3-2.
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Genomic context

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See SDH3-1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
6
Sequence:
Chromosome: 5; NC_003076.8 (2978825..2981096)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene mitochondrial HSO70 2 Neighboring gene ncRNA Neighboring gene pumilio 21 Neighboring gene Octicosapeptide/Phox/Bem1p family protein Neighboring gene LisH/CRA/RING-U-box domains-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The four subunits of mitochondrial respiratory complex II are encoded by multiple nuclear genes and targeted to mitochondria in Arabidopsis thaliana. Figueroa P, et al. Plant Mol Biol, 2002 Nov. PMID 12374303
  2. Mitochondrial cytochrome c oxidase and succinate dehydrogenase complexes contain plant specific subunits. Millar AH, et al. Plant Mol Biol, 2004 Sep. PMID 15604729
  3. Functional and composition differences between mitochondrial complex II in Arabidopsis and rice are correlated with the complex genetic history of the enzyme. Huang S, et al. Plant Mol Biol, 2010 Feb. PMID 19924544
  4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001085086.1
NM_001203339.2
NM_120997.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables electron transfer activity IEA
Inferred from Electronic Annotation
more info
  
enables succinate dehydrogenase activity TAS
Traceable Author Statement
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within mitochondrial electron transport, succinate to ubiquinone TAS
Traceable Author Statement
more info
 PubMed 
involved_in tricarboxylic acid cycle IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
located_in mitochondrion IDA
Inferred from Direct Assay
more info
 PubMed 
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  
part_of respiratory chain complex II (succinate dehydrogenase) IDA
Inferred from Direct Assay
more info
 PubMed 
part_of respiratory chain complex II (succinate dehydrogenase) IEA
Inferred from Electronic Annotation
more info
  
part_of respiratory chain complex II (succinate dehydrogenase) ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 

General protein information

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Preferred Names
succinate dehydrogenase 3-1
NP_001078555.1
  • succinate dehydrogenase 3-1 (SDH3-1); CONTAINS InterPro DOMAIN/s: Succinate dehydrogenase/Fumarate reductase, transmembrane subunit (InterPro:IPR000701); BEST Arabidopsis thaliana protein match is: succinate dehydrogenase 3-2 (TAIR:AT4G32210.1); Has 364 Blast hits to 364 proteins in 113 species: Archae - 0; Bacteria - 45; Metazoa - 67; Fungi - 62; Plants - 63; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).
NP_001190268.1
  • succinate dehydrogenase 3-1 (SDH3-1); CONTAINS InterPro DOMAIN/s: Succinate dehydrogenase/Fumarate reductase, transmembrane subunit (InterPro:IPR000701); BEST Arabidopsis thaliana protein match is: succinate dehydrogenase 3-2 (TAIR:AT4G32210.1).
NP_196522.1
  • succinate dehydrogenase 3-1 (SDH3-1); CONTAINS InterPro DOMAIN/s: Succinate dehydrogenase/Fumarate reductase, transmembrane subunit (InterPro:IPR000701); BEST Arabidopsis thaliana protein match is: succinate dehydrogenase 3-2 (TAIR:AT4G32210.1); Has 400 Blast hits to 400 proteins in 121 species: Archae - 0; Bacteria - 45; Metazoa - 67; Fungi - 61; Plants - 100; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    2978825..2981096
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001203339.2 → NP_001190268.1  succinate dehydrogenase 3-1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190268.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O49369, P0DKI0, P0DKI1, Q8L9V4, Q9FXX8, Q9LXC4
    UniProtKB/TrEMBL
    A0A5S9XXU8, A0A5S9Y2Q6, A0A654FV46, A0A654FZN5
    Conserved Domains (1) summary
    cl00881
    Location:1 → 213
    SQR_QFR_TM; Succinate:quinone oxidoreductase (SQR) and Quinol:fumarate reductase (QFR) family, transmembrane subunits; SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol, while QFR catalyzes the reverse reaction. SQR, ...

  2. NM_120997.4 → NP_196522.1  succinate dehydrogenase 3-1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_196522.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O49369, P0DKI0, P0DKI1, Q8L9V4, Q9FXX8, Q9LXC4
    UniProtKB/TrEMBL
    A0A5S9XXU8, A0A5S9Y2Q6, A0A654FV46, A0A654FZN5
    Conserved Domains (1) summary
    cl00881
    Location:1 → 213
    SQR_QFR_TM; Succinate:quinone oxidoreductase (SQR) and Quinol:fumarate reductase (QFR) family, transmembrane subunits; SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol, while QFR catalyzes the reverse reaction. SQR, ...

  3. NM_001085086.1 → NP_001078555.1  succinate dehydrogenase 3-1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078555.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A8MSF5
    Conserved Domains (1) summary
    cl00881
    Location:25 → 186
    SQR_QFR_TM; Succinate:quinone oxidoreductase (SQR) and Quinol:fumarate reductase (QFR) family, transmembrane subunits; SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol, while QFR catalyzes the reverse reaction. SQR, ...
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P0DKI0.1
P0DKI1.1

Gene LinkOut

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