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EICBP.B ethylene induced calmodulin binding protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830800, updated on 18-Sep-2024

Summary

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Official Symbol
EICBP.B
Official Full Name
ethylene induced calmodulin binding protein
Primary source
TAIR:AT5G09410
Locus tag
AT5G09410
See related
Araport:AT5G09410
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
calmodulin-binding transcription activator 1; CAMTA1; ethylene induced calmodulin binding protein; T5E8.210; T5E8_210
Summary
calmodulin-binding protein, similar to another ethylene-upregulated calmodulin-binding protein ER1 GI:11612392 from (Nicotiana tabacum)
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Genomic context

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See EICBP.B in Genome Data Viewer
Location:
chromosome: 5
Exon count:
16
Sequence:
Chromosome: 5; NC_003076.8 (2920827..2927480)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene CD2-binding protein-like protein Neighboring gene K+ uptake permease 7 Neighboring gene translocon at the outer membrane of chloroplasts 64-V Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene EXORDIUM like 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. CAMTA 1 regulates drought responses in Arabidopsis thaliana. Pandey N, et al. BMC Genomics, 2013 Apr 2. PMID 23547968, Free PMC Article
  2. Calmodulin-binding transcription activator 1 mediates auxin signaling and responds to stresses in Arabidopsis. Galon Y, et al. Planta, 2010 Jun. PMID 20383645
  3. Roles for Arabidopsis CAMTA transcription factors in cold-regulated gene expression and freezing tolerance. Doherty CJ, et al. Plant Cell, 2009 Mar. PMID 19270186, Free PMC Article
  4. Arabidopsis CAMTA Transcription Factors Regulate Pipecolic Acid Biosynthesis and Priming of Immunity Genes. Kim Y, et al. Mol Plant, 2020 Jan 6. PMID 31733370
  5. Roles of CAMTA transcription factors and salicylic acid in configuring the low-temperature transcriptome and freezing tolerance of Arabidopsis. Kim Y, et al. Plant J, 2013 Aug. PMID 23581962

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Arabidopsis CAMTA Transcription Factors Regulate Pipecolic Acid Biosynthesis and Priming of Immunity Genes.
    Title: Arabidopsis CAMTA Transcription Factors Regulate Pipecolic Acid Biosynthesis and Priming of Immunity Genes.
  2. CAMTA1, CAMTA2 and CAMTA3 function together to inhibit salicylic acid biosynthesis at warm temperature (22 degrees C).CAMTA1, CAMTA2 and CAMTA3 function together to positively regulate CBF1, CBF2 and CBF3 and freezing tolerance.
    Title: Roles of CAMTA transcription factors and salicylic acid in configuring the low-temperature transcriptome and freezing tolerance of Arabidopsis.
  3. CAMTA1 regulates several stress responsive genes including RD26, ERD7, RAB18, LTPs, COR78, CBF1, HSPs etc. and promoter of these genes were enriched with CAMTA recognition cis-element.
    Title: CAMTA 1 regulates drought responses in Arabidopsis thaliana.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001125723.2
NM_001343050.1
NM_120978.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables calmodulin binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables calmodulin binding TAS
Traceable Author Statement
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within positive regulation of DNA-templated transcription IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in positive regulation of DNA-templated transcription IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within regulation of DNA-templated transcription TAS
Traceable Author Statement
more info
 PubMed 
involved_in response to auxin IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within response to cold IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within response to freezing IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in response to freezing IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in response to water deprivation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
ethylene induced calmodulin binding protein
NP_001119195.1
  • ethylene induced calmodulin binding protein (EICBP.B); FUNCTIONS IN: calmodulin binding, transcription regulator activity, transcription activator activity; INVOLVED IN: response to freezing; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Immunoglobulin E-set (InterPro:IPR014756), Ankyrin repeat-containing domain (InterPro:IPR020683), CG-1 (InterPro:IPR005559), IQ calmodulin-binding region (InterPro:IPR000048), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (TAIR:AT5G64220.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_001190267.1
  • ethylene induced calmodulin binding protein (EICBP.B); FUNCTIONS IN: calmodulin binding, transcription regulator activity, transcription activator activity; INVOLVED IN: response to freezing; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Immunoglobulin E-set (InterPro:IPR014756), Ankyrin repeat-containing domain (InterPro:IPR020683), CG-1 (InterPro:IPR005559), IQ calmodulin-binding region (InterPro:IPR000048), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (TAIR:AT5G64220.2).
NP_196503.3
  • ethylene induced calmodulin binding protein (EICBP.B); FUNCTIONS IN: calmodulin binding, transcription regulator activity, transcription activator activity; INVOLVED IN: response to freezing; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Immunoglobulin E-set (InterPro:IPR014756), Ankyrin repeat-containing domain (InterPro:IPR020683), CG-1 (InterPro:IPR005559), Ankyrin repeat (InterPro:IPR002110), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (TAIR:AT5G64220.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    2920827..2927480
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001203338.1 → NP_001190267.1  ethylene induced calmodulin binding protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190267.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9Y2P2, A0A654FZM2, F4KCL4
    Conserved Domains (6) summary
    PTZ00322
    Location:679 → 813
    PTZ00322; 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
    smart00015
    Location:903 → 924
    IQ; Calmodulin-binding motif
    sd00045
    Location:671 → 702
    ANK; ANK repeat [structural motif]
    pfam01833
    Location:471 → 550
    TIG; IPT/TIG domain
    pfam03859
    Location:84 → 226
    CG-1; CG-1 domain
    pfam12796
    Location:651 → 730
    Ank_2; Ankyrin repeats (3 copies)

  2. NM_001125723.2 → NP_001119195.1  ethylene induced calmodulin binding protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001119195.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4KCL6, Q0WQF9, Q9FY74
    UniProtKB/TrEMBL
    A0A178UKF0
    Conserved Domains (6) summary
    PTZ00322
    Location:620 → 754
    PTZ00322; 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
    smart00015
    Location:844 → 865
    IQ; Calmodulin-binding motif
    sd00045
    Location:612 → 643
    ANK; ANK repeat [structural motif]
    pfam01833
    Location:412 → 491
    TIG; IPT/TIG domain
    pfam03859
    Location:26 → 138
    CG-1; CG-1 domain
    pfam12796
    Location:592 → 671
    Ank_2; Ankyrin repeats (3 copies)

  3. NM_120978.5 → NP_196503.3  ethylene induced calmodulin binding protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_196503.3

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UKF0
    Conserved Domains (6) summary
    smart00015
    Location:826 → 847
    IQ; Calmodulin-binding motif
    cd00204
    Location:583 → 686
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam01833
    Location:394 → 473
    TIG; IPT/TIG domain
    pfam03859
    Location:24 → 138
    CG-1; CG-1 domain
    pfam13637
    Location:598 → 648
    Ank_4; Ankyrin repeats (many copies)
    sd00045
    Location:594 → 625
    ANK; ANK repeat [structural motif]

  4. NM_001343050.1 → NP_001331994.1  ethylene induced calmodulin binding protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UMW2, A0A1P8BFI4
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FY74.2

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