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Ubiquitin family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830793, updated on 18-Sep-2024

Summary

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Official Full Name
Ubiquitin family protein
Primary source
TAIR:AT5G09340
Locus tag
AT5G09340
See related
Araport:AT5G09340
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T5E8.140; T5E8_140
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Genomic context

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Location:
chromosome: 5
Exon count:
1
Sequence:
Chromosome: 5; NC_003076.8 (2896675..2896914, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene vacuolar protein sorting-associated 9A-like protein Neighboring gene NAC domain containing protein 82 Neighboring gene phosphatidylinositol 4-OH kinase beta2 Neighboring gene tRNA-Leu

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
Ubiquitin family protein
NP_196496.1
  • Ubiquitin family protein; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: ubiquitin 12 (TAIR:AT1G55060.1); Has 8020 Blast hits to 3500 proteins in 614 species: Archae - 0; Bacteria - 2; Metazoa - 3485; Fungi - 998; Plants - 2061; Viruses - 142; Other Eukaryotes - 1332 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    2896675..2896914 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_120970.1 → NP_196496.1  Ubiquitin family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_196496.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178U7S4, Q9FY81
    Conserved Domains (2) summary
    smart00213
    Location:1 → 72
    UBQ; Ubiquitin homologues
    cl00155
    Location:1 → 79
    UBQ; Ubiquitin-like proteins
Nucleotide Protein
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