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RING/FYVE/PHD zinc finger superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830776, updated on 18-Sep-2024

Summary

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Official Full Name
RING/FYVE/PHD zinc finger superfamily protein
Primary source
TAIR:AT5G08750
Locus tag
AT5G08750
See related
Araport:AT5G08750
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 5
Exon count:
4
Sequence:
Chromosome: 5; NC_003076.8 (2851814..2854566)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene IBR domain-containing protein Neighboring gene NAD(P)H dehydrogenase C1 Neighboring gene uncharacterized protein Neighboring gene topoisomerase I damage affected-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001085078.1
NM_001085079.2
NM_001343031.1
NM_120956.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
RING/FYVE/PHD zinc finger superfamily protein
NP_001078547.1
  • RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT5G63780.1); Has 319 Blast hits to 315 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 317; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
NP_001078548.1
  • RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT5G63780.1); Has 309 Blast hits to 307 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 307; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
NP_568206.1
  • RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT5G63780.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    2851814..2854566
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001343032.1 → NP_001331927.1  RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UIH7, A0A384KVW2, A0A654FZY8, Q93ZD2, Q9C5A2
    Conserved Domains (2) summary
    cd00162
    Location:112 → 156
    RING_Ubox; RING-CH finger (C4HC3-type) [structural motif]
    cl17238
    Location:123 → 157
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  2. NM_001343033.1 → NP_001331926.1  RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654FZY8, F4KCH0, Q93ZD2
    Conserved Domains (2) summary
    cd00162
    Location:119 → 163
    RING_Ubox; RING-CH finger (C4HC3-type) [structural motif]
    cl17238
    Location:130 → 164
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  3. NM_001343034.1 → NP_001331928.1  RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UIH7, A0A384KVW2, A0A654FZY8, Q93ZD2, Q9C5A2
    Conserved Domains (2) summary
    cd00162
    Location:112 → 156
    RING_Ubox; RING-CH finger (C4HC3-type) [structural motif]
    cl17238
    Location:123 → 157
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  4. NM_001343035.1 → NP_001331929.1  RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654FZY8, F4KCH0, Q93ZD2
    Conserved Domains (2) summary
    cd00162
    Location:119 → 163
    RING_Ubox; RING-CH finger (C4HC3-type) [structural motif]
    cl17238
    Location:130 → 164
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  5. NM_001343036.1 → NP_001331930.1  RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UIH7, A0A384KVW2, A0A654FZY8, Q93ZD2, Q9C5A2
    Conserved Domains (2) summary
    cd00162
    Location:112 → 156
    RING_Ubox; RING-CH finger (C4HC3-type) [structural motif]
    cl17238
    Location:123 → 157
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  6. NM_001343037.1 → NP_001331931.1  RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UIH7, A0A384KVW2, A0A654FZY8, Q93ZD2, Q9C5A2
    Conserved Domains (2) summary
    cd00162
    Location:112 → 156
    RING_Ubox; RING-CH finger (C4HC3-type) [structural motif]
    cl17238
    Location:123 → 157
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  7. NM_120956.3 → NP_568206.1  RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_568206.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UIH7, A0A384KVW2, A0A654FZY8, Q93ZD2, Q9C5A2
    Conserved Domains (2) summary
    cd00162
    Location:112 → 156
    RING_Ubox; RING-CH finger (C4HC3-type) [structural motif]
    cl17238
    Location:123 → 157
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  8. NM_001085079.2 → NP_001078548.1  RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078548.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654FZY8, F4KCH0, Q93ZD2
    Conserved Domains (2) summary
    cd00162
    Location:119 → 163
    RING_Ubox; RING-CH finger (C4HC3-type) [structural motif]
    cl17238
    Location:130 → 164
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  9. NM_001343031.1 → NP_001331925.1  RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654FZY8, F4KCH0, Q93ZD2
    Conserved Domains (2) summary
    cd00162
    Location:119 → 163
    RING_Ubox; RING-CH finger (C4HC3-type) [structural motif]
    cl17238
    Location:130 → 164
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  10. NM_001085078.1 → NP_001078547.1  RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078547.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UIH7, A0A384KVW2, A0A654FZY8, Q93ZD2, Q9C5A2
    Conserved Domains (2) summary
    cd00162
    Location:112 → 156
    RING_Ubox; RING-CH finger (C4HC3-type) [structural motif]
    cl17238
    Location:123 → 157
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
Nucleotide Protein
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