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Transcription initiation Spt4-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830757, updated on 18-Sep-2024

Summary

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Official Full Name
Transcription initiation Spt4-like protein
Primary source
TAIR:AT5G08565
Locus tag
AT5G08565
See related
Araport:AT5G08565
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
SPT4-1
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Genomic context

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Location:
chromosome: 5
Exon count:
5
Sequence:
Chromosome: 5; NC_003076.8 (2775897..2777474)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene GC-rich sequence DNA-binding factor-like protein Neighboring gene transducin family protein / WD-40 repeat family protein Neighboring gene Pyruvate kinase family protein Neighboring gene Calcium-binding EF hand family protein Neighboring gene SNF1-related protein kinase 2.1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The transcript elongation factor SPT4/SPT5 is involved in auxin-related gene expression in Arabidopsis. Dürr J, et al. Nucleic Acids Res, 2014 Apr. PMID 24497194, Free PMC Article
  2. The zinc-finger protein SPT4 interacts with SPT5L/KTF1 and modulates transcriptional silencing in Arabidopsis. Köllen K, et al. FEBS Lett, 2015 Oct 24. PMID 26424658
  3. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001203335.1
NM_120943.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
involved_in transcription elongation-coupled chromatin remodeling IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Transcription initiation Spt4-like protein
NP_001190264.1
  • Transcription initiation Spt4-like protein; FUNCTIONS IN: positive transcription elongation factor activity, zinc ion binding; INVOLVED IN: positive regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Transcription initiation Spt4 (InterPro:IPR009287), Transcription initiation Spt4-like (InterPro:IPR016046); BEST Arabidopsis thaliana protein match is: SPT4 homolog 2 (TAIR:AT5G63670.1).
NP_568201.1
  • Transcription initiation Spt4-like protein; FUNCTIONS IN: positive transcription elongation factor activity, zinc ion binding; INVOLVED IN: positive regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Transcription initiation Spt4 (InterPro:IPR009287), Transcription initiation Spt4-like (InterPro:IPR016046); BEST Arabidopsis thaliana protein match is: SPT4 homolog 2 (TAIR:AT5G63670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    2775897..2777474
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001203335.1 → NP_001190264.1  Transcription initiation Spt4-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190264.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4KB46
    Conserved Domains (1) summary
    cd07973
    Location:14 → 110
    Spt4; Transcription elongation factor Spt4

  2. NM_120943.4 → NP_568201.1  Transcription initiation Spt4-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_568201.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q29PX1, Q8LCQ3
    UniProtKB/TrEMBL
    A0A178UPE0, A0A654G010
    Conserved Domains (1) summary
    cd07973
    Location:14 → 110
    Spt4; Transcription elongation factor Spt4
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8LCQ3.3

Gene LinkOut

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