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VQ motif-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830747, updated on 18-Sep-2024

Summary

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Official Full Name
VQ motif-containing protein
Primary source
TAIR:AT5G08480
Locus tag
AT5G08480
See related
Araport:AT5G08480
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F8L15.9
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Genomic context

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Location:
chromosome: 5
Exon count:
2
Sequence:
Chromosome: 5; NC_003076.8 (2743319..2745111)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene GDSL-like Lipase/Acylhydrolase superfamily protein Neighboring gene peroxisome 1 Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene Transmembrane CLPTM1 family protein Neighboring gene Defensin-like (DEFL) family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Structural and functional analysis of VQ motif-containing proteins in Arabidopsis as interacting proteins of WRKY transcription factors. Cheng Y, et al. Plant Physiol, 2012 Jun. PMID 22535423, Free PMC Article
  2. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
  3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001343006.1
NM_001343007.1
NM_180462.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
VQ motif-containing protein
NP_001318511.1
  • VQ motif-containing protein; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT1G28280.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_850793.1
  • VQ motif-containing protein; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT2G33780.1); Has 130 Blast hits to 130 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 126; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    2743319..2745111
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001343006.1 → NP_001318511.1  VQ motif-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FNP0

  2. NM_180462.2 → NP_850793.1  VQ motif-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850793.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0MFE8, Q8LE89, Q9FNP0
    UniProtKB/TrEMBL
    A0A178UC47, A0A5S9Y2J5
    Conserved Domains (1) summary
    pfam05678
    Location:17 → 40
    VQ; VQ motif

  3. NM_001343007.1 → NP_001330395.1  VQ motif-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0MFE8, Q8LE89, Q9FNP0
    UniProtKB/TrEMBL
    A0A178UC47, A0A5S9Y2J5
    Conserved Domains (1) summary
    pfam05678
    Location:17 → 40
    VQ; VQ motif
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FNP0.1

Gene LinkOut

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