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E13L3 glucan endo-1,3-beta-glucosidase-like protein 3 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830694, updated on 18-Sep-2024

Summary

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Official Symbol
E13L3
Official Full Name
glucan endo-1,3-beta-glucosidase-like protein 3
Primary source
TAIR:AT5G08000
Locus tag
AT5G08000
See related
Araport:AT5G08000
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
''glucan endo-1; 3-beta-glucosidase-like protein 3; 3-beta-glucosidase-like protein 3''; F13G24.200; F13G24_200; glucan endo-1; PDCB2; PLASMODESMATA CALLOSE-BINDING PROTEIN 2
Summary
Encodes a member of the X8-GPI family of proteins. It localizes to the plasmodesmata and binds callose.
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Genomic context

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See E13L3 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
4
Sequence:
Chromosome: 5; NC_003076.8 (2563366..2565547)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene dentin sialophosphoprotein-like protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Cytochrome P450 superfamily protein Neighboring gene flavonoid protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Plasmodesmata callose binding protein 2 contributes to the regulation of cambium/phloem formation and auxin response during the tissue reunion process in incised Arabidopsis stem. Ohba Y, et al. J Plant Res, 2023 Nov. PMID 37707645
  2. An Arabidopsis GPI-anchor plasmodesmal neck protein with callose binding activity and potential to regulate cell-to-cell trafficking. Simpson C, et al. Plant Cell, 2009 Feb. PMID 19223515, Free PMC Article
  3. Proteomic analysis of glycosylphosphatidylinositol-anchored membrane proteins. Elortza F, et al. Mol Cell Proteomics, 2003 Dec. PMID 14517339
  4. Identification of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A proteomic and genomic analysis. Borner GH, et al. Plant Physiol, 2003 Jun. PMID 12805588, Free PMC Article
  5. Prediction of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A genomic analysis. Borner GH, et al. Plant Physiol, 2002 Jun. PMID 12068095, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Plasmodesmata callose binding protein 2 contributes to the regulation of cambium/phloem formation and auxin response during the tissue reunion process in incised Arabidopsis stem.
    Title: Plasmodesmata callose binding protein 2 contributes to the regulation of cambium/phloem formation and auxin response during the tissue reunion process in incised Arabidopsis stem.
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General gene information

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NM_120882.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables (1->3)-beta-D-glucan binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables polysaccharide binding IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in response to heat IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane TAS
Traceable Author Statement
more info
 PubMed 
located_in plasma membrane HDA PubMed 
located_in plasma membrane ISM
Inferred from Sequence Model
more info
  
located_in plasmodesma IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
glucan endo-1,3-beta-glucosidase-like protein 3
NP_196417.1
  • ''glucan endo-1,3-beta-glucosidase-like protein 3'' (E13L3); FUNCTIONS IN: callose binding, polysaccharide binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasmodesma, anchored to plasma membrane, anchored to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: plasmodesmata callose-binding protein 1 (TAIR:AT5G61130.1); Has 1582 Blast hits to 1532 proteins in 101 species: Archae - 0; Bacteria - 6; Metazoa - 10; Fungi - 147; Plants - 1404; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    2563366..2565547
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001342974.1 → NP_001332606.1  glucan endo-1,3-beta-glucosidase-like protein 3 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BHI7, A0A5S9Y336, A0A654FZB1

  2. NM_120882.4 → NP_196417.1  glucan endo-1,3-beta-glucosidase-like protein 3 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_196417.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8LBE9, Q9SD84
    UniProtKB/TrEMBL
    A0A654FZB1
    Conserved Domains (1) summary
    smart00768
    Location:20 → 104
    X8; Possibly involved in carbohydrate binding
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SD84.1

Gene LinkOut

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