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Ribosomal protein S4 (RPS4A) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830600, updated on 18-Sep-2024

Summary

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Official Full Name
Ribosomal protein S4 (RPS4A) family protein
Primary source
TAIR:AT5G07090
Locus tag
AT5G07090
See related
Araport:AT5G07090
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T28J14.30
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Genomic context

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Location:
chromosome: 5
Exon count:
5
Sequence:
Chromosome: 5; NC_003076.8 (2202364..2204150)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene CBL-interacting protein kinase 2 Neighboring gene ncRNA Neighboring gene HXXXD-type acyl-transferase family protein Neighboring gene WRKY DNA-binding protein 26 Neighboring gene prenylated RAB acceptor 1.B6 Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. High heterogeneity within the ribosomal proteins of the Arabidopsis thaliana 80S ribosome. Giavalisco P, et al. Plant Mol Biol, 2005 Mar. PMID 15821981
  2. Proteomic profiling of tandem affinity purified 14-3-3 protein complexes in Arabidopsis thaliana. Chang IF, et al. Proteomics, 2009 Jun. PMID 19452453, Free PMC Article
  3. In Planta Determination of the mRNA-Binding Proteome of Arabidopsis Etiolated Seedlings. Reichel M, et al. Plant Cell, 2016 Oct. PMID 27729395, Free PMC Article
  4. A proteomics dissection of Arabidopsis thaliana vacuoles isolated from cell culture. Jaquinod M, et al. Mol Cell Proteomics, 2007 Mar. PMID 17151019, Free PMC Article
  5. Novel Aquaporin Regulatory Mechanisms Revealed by Interactomics. Bellati J, et al. Mol Cell Proteomics, 2016 Nov. PMID 27609422, Free PMC Article

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001036769.1
NM_120791.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables mRNA binding HDA PubMed 
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
NOT located_in Golgi apparatus RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
NOT located_in cytosol RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
located_in cytosolic ribosome HDA PubMed 
located_in plant-type vacuole HDA PubMed 
located_in plasma membrane HDA PubMed 

General protein information

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Preferred Names
Ribosomal protein S4 (RPS4A) family protein
NP_001031846.1
  • Ribosomal protein S4 (RPS4A) family protein; FUNCTIONS IN: structural constituent of ribosome, protein binding; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S4e, central (InterPro:IPR013845), KOW (InterPro:IPR005824), RNA-binding S4 (InterPro:IPR002942), Ribosomal protein S4e, N-terminal (InterPro:IPR013843), Ribosomal protein S4e (InterPro:IPR000876); BEST Arabidopsis thaliana protein match is: Ribosomal protein S4 (RPS4A) family protein (TAIR:AT5G58420.1); Has 1386 Blast hits to 1386 proteins in 448 species: Archae - 256; Bacteria - 2; Metazoa - 428; Fungi - 188; Plants - 271; Viruses - 0; Other Eukaryotes - 241 (source: NCBI BLink).
NP_568179.1
  • Ribosomal protein S4 (RPS4A) family protein; FUNCTIONS IN: structural constituent of ribosome, protein binding; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S4e, central (InterPro:IPR013845), Ribosomal protein S4e, N-terminal, conserved site (InterPro:IPR018199), RNA-binding S4 (InterPro:IPR002942), KOW (InterPro:IPR005824), Ribosomal protein S4e, N-terminal (InterPro:IPR013843), Ribosomal protein S4e (InterPro:IPR000876); BEST Arabidopsis thaliana protein match is: Ribosomal protein S4 (RPS4A) family protein (TAIR:AT5G58420.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    2202364..2204150
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001342916.1 → NP_001332405.1  Ribosomal protein S4 (RPS4A) family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VWY7, F4K5C7

  2. NM_120791.4 → NP_568179.1  Ribosomal protein S4 (RPS4A) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_568179.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P49204, Q42346, Q9FL39, Q9LYQ6
    UniProtKB/TrEMBL
    A0A178UFG0, A0A654FZG2
    Conserved Domains (1) summary
    PLN00036
    Location:1 → 261
    PLN00036; 40S ribosomal protein S4; Provisional

  3. NM_001036769.1 → NP_001031846.1  Ribosomal protein S4 (RPS4A) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031846.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VWY7, F4K5C7
    Conserved Domains (6) summary
    PLN00036
    Location:1 → 243
    PLN00036; 40S ribosomal protein S4; Provisional
    cd00165
    Location:33 → 94
    S4; S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized ...
    cd06087
    Location:157 → 211
    KOW_RPS4; KOW motif of Ribosomal Protein S4 (RPS4)
    pfam00900
    Location:77 → 151
    Ribosomal_S4e; Ribosomal family S4e
    pfam08071
    Location:1 → 21
    RS4NT; RS4NT (NUC023) domain
    pfam16121
    Location:194 → 241
    40S_S4_C; 40S ribosomal protein S4 C-terminus
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P49204.4

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