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myb-like HTH transcriptional regulator family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830570, updated on 18-Sep-2024

Summary

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Official Full Name
myb-like HTH transcriptional regulator family protein
Primary source
TAIR:AT5G06800
Locus tag
AT5G06800
See related
Araport:AT5G06800
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MPH15.16; MPH15_16
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Genomic context

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Location:
chromosome: 5
Exon count:
6
Sequence:
Chromosome: 5; NC_003076.8 (2103115..2106004)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein Neighboring gene cotton fiber protein Neighboring gene pseudo Neighboring gene transcription termination factor family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses. Efroni I, et al. Dev Cell, 2013 Feb 25. PMID 23449474, Free PMC Article
  2. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
  3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001342908.1
NM_120763.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of DNA-templated transcription TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
myb-like HTH transcriptional regulator family protein
NP_001318494.1
  • myb-like HTH transcriptional regulator family protein; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-related (InterPro:IPR012287), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: myb-like HTH transcriptional regulator family protein (TAIR:AT2G01060.1).
NP_196298.2
  • myb-like HTH transcriptional regulator family protein; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G04450.1); Has 1663 Blast hits to 1650 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 6; Plants - 1631; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    2103115..2106004
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001342909.1 → NP_001330818.1  myb-like HTH transcriptional regulator family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BBX9

  2. NM_001342908.1 → NP_001318494.1  myb-like HTH transcriptional regulator family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UFL5, A0A2H1ZE52

  3. NM_120763.4 → NP_196298.2  myb-like HTH transcriptional regulator family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_196298.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4K587, Q0WVU3, Q9FG27
    UniProtKB/TrEMBL
    A0A178UFL5, A0A5S9Y475, A0A654FZG5
    Conserved Domains (2) summary
    TIGR01557
    Location:192 → 248
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
    pfam14379
    Location:277 → 323
    Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q0WVU3.1

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