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KH domain-containing protein / zinc finger (CCCH type) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830566, updated on 18-Sep-2024

Summary

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Official Full Name
KH domain-containing protein / zinc finger (CCCH type) family protein
Primary source
TAIR:AT5G06770
Locus tag
AT5G06770
See related
Araport:AT5G06770
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MPH15.13; MPH15_13
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Genomic context

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Location:
chromosome: 5
Exon count:
3
Sequence:
Chromosome: 5; NC_003076.8 (2090692..2093001, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Protein phosphatase 2C family protein Neighboring gene uncharacterized protein Neighboring gene Late Embryogenesis Abundant 4-5 Neighboring gene Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein Neighboring gene cotton fiber protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis KHZ1 and KHZ2, two novel non-tandem CCCH zinc-finger and K-homolog domain proteins, have redundant roles in the regulation of flowering and senescence. Yan Z, et al. Plant Mol Biol, 2017 Dec. PMID 29076025
  2. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
  3. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
  4. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
  5. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. KHZ1 and KHZ2 have redundant roles in the regulation of flowering and senescence in Arabidopsis.[KHZ2]
    Title: Arabidopsis KHZ1 and KHZ2, two novel non-tandem CCCH zinc-finger and K-homolog domain proteins, have redundant roles in the regulation of flowering and senescence.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001342905.1
NM_001342907.1
NM_120760.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables RNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within positive regulation of leaf senescence IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within regulation of DNA-templated transcription TAS
Traceable Author Statement
more info
 PubMed 
acts_upstream_of_or_within regulation of photoperiodism, flowering IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
KH domain-containing protein / zinc finger (CCCH type) family protein
NP_196295.1
  • KH domain-containing protein / zinc finger (CCCH type) family protein; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), K Homology (InterPro:IPR004087), K Homology, type 1, subgroup (InterPro:IPR018111), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: KH domain-containing protein / zinc finger (CCCH type) family protein (TAIR:AT3G12130.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    2090692..2093001 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001342903.1 → NP_001332012.1  KH domain-containing protein / zinc finger (CCCH type) family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178ULL5, A0A178UNF0, A0A1P8BFL7, A0A384LAX4
    Conserved Domains (2) summary
    smart00356
    Location:178 → 204
    ZnF_C3H1; zinc finger
    cd22464
    Location:89 → 154
    KH-I_AtC3H36_like; type I K homology (KH) RNA-binding domain found in Arabidopsis thaliana zinc finger CCCH domain-containing proteins AtC3H36, AtC3H52 and similar proteins

  2. NM_001342904.1 → NP_001332013.1  KH domain-containing protein / zinc finger (CCCH type) family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178ULL5, A0A178UNF0, A0A1P8BFL7, A0A384LAX4
    Conserved Domains (2) summary
    smart00356
    Location:178 → 204
    ZnF_C3H1; zinc finger
    cd22464
    Location:89 → 154
    KH-I_AtC3H36_like; type I K homology (KH) RNA-binding domain found in Arabidopsis thaliana zinc finger CCCH domain-containing proteins AtC3H36, AtC3H52 and similar proteins

  3. NM_001342906.1 → NP_001332010.1  KH domain-containing protein / zinc finger (CCCH type) family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BFQ6
    Conserved Domains (2) summary
    smart00356
    Location:133 → 159
    ZnF_C3H1; zinc finger
    cd22464
    Location:44 → 109
    KH-I_AtC3H36_like; type I K homology (KH) RNA-binding domain found in Arabidopsis thaliana zinc finger CCCH domain-containing proteins AtC3H36, AtC3H52 and similar proteins

  4. NM_120760.3 → NP_196295.1  KH domain-containing protein / zinc finger (CCCH type) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_196295.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8LC70, Q9FG30
    UniProtKB/TrEMBL
    A0A178ULL5, A0A5S9Y2Q2, A0A654FYW7
    Conserved Domains (3) summary
    smart00356
    Location:205 → 231
    ZnF_C3H1; zinc finger
    pfam00642
    Location:38 → 61
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    cd22464
    Location:116 → 181
    KH-I_AtC3H36_like; type I K homology (KH) RNA-binding domain found in Arabidopsis thaliana zinc finger CCCH domain-containing proteins AtC3H36, AtC3H52 and similar proteins

  5. NM_001342905.1 → NP_001332009.1  KH domain-containing protein / zinc finger (CCCH type) family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178ULL5, A0A178UNF0, A0A1P8BFL7, A0A384LAX4
    Conserved Domains (2) summary
    smart00356
    Location:178 → 204
    ZnF_C3H1; zinc finger
    cd22464
    Location:89 → 154
    KH-I_AtC3H36_like; type I K homology (KH) RNA-binding domain found in Arabidopsis thaliana zinc finger CCCH domain-containing proteins AtC3H36, AtC3H52 and similar proteins

  6. NM_001342907.1 → NP_001332011.1  KH domain-containing protein / zinc finger (CCCH type) family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178ULL5, A0A1P8BFR2
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FG30.1

Gene LinkOut

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