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transmembrane/coiled-coil protein (Protein of unknown function DUF106, transmembrane) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830554, updated on 18-Sep-2024

Summary

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Official Full Name
transmembrane/coiled-coil protein (Protein of unknown function DUF106, transmembrane)
Primary source
TAIR:AT5G06660
Locus tag
AT5G06660
See related
Araport:AT5G06660
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F15M7.19; F15M7_19
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Genomic context

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Location:
chromosome: 5
Exon count:
1
Sequence:
Chromosome: 5; NC_003076.8 (2046785..2047961)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Proline-rich extensin-like family protein Neighboring gene gibberellin-regulated-like protein Neighboring gene C2H2 and C2HC zinc fingers superfamily protein Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene spindle pole body component 98

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Separating Golgi Proteins from Cis to Trans Reveals Underlying Properties of Cisternal Localization. Parsons HT, et al. Plant Cell, 2019 Sep. PMID 31266899, Free PMC Article
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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NM_120749.3

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in Golgi cis cisterna HDA PubMed 
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
transmembrane/coiled-coil protein (Protein of unknown function DUF106, transmembrane)
NP_196284.1
  • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF106, transmembrane (InterPro:IPR002809), Uncharacterised conserved protein UCP023322, transmembrane eukaryotic (InterPro:IPR008559); BEST Arabidopsis thaliana protein match is: Protein of unknown function DUF106, transmembrane (TAIR:AT3G12030.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    2046785..2047961
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_120749.3 → NP_196284.1  transmembrane/coiled-coil protein (Protein of unknown function DUF106, transmembrane) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_196284.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UK01, A0A5S9Y2B4, Q8LDF3, Q9FG04
    Conserved Domains (1) summary
    pfam01956
    Location:16 → 175
    DUF106; Integral membrane protein DUF106
Nucleotide Protein
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