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Plant self-incompatibility protein S1 family [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830489, updated on 18-Sep-2024

Summary

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Official Full Name
Plant self-incompatibility protein S1 family
Primary source
TAIR:AT5G06020
Locus tag
AT5G06020
See related
Araport:AT5G06020
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
K18J17.22; K18J17_22
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Genomic context

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Location:
chromosome: 5
Exon count:
1
Sequence:
Chromosome: 5; NC_003076.8 (1811938..1812393)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 3G2 Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene Plant self-incompatibility protein S1 family Neighboring gene self-incompatibility protein-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Plant self-incompatibility protein S1 family
NP_196221.1
  • Plant self-incompatibility protein S1 family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: Plant self-incompatibility protein S1 family (TAIR:AT5G06030.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    1811938..1812393
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_120684.1 → NP_196221.1  Plant self-incompatibility protein S1 family [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_196221.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FI84
    UniProtKB/TrEMBL
    A0A5S9Y2M3
    Conserved Domains (1) summary
    pfam05938
    Location:48 → 138
    Self-incomp_S1; Plant self-incompatibility protein S1
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FI84.1

Gene LinkOut

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