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Myb/SANT-like DNA-binding domain protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830465, updated on 18-Sep-2024

Summary

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Official Full Name
Myb/SANT-like DNA-binding domain protein
Primary source
TAIR:AT5G05800
Locus tag
AT5G05800
See related
Araport:AT5G05800
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MJJ3.22; MJJ3_22
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Genomic context

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Location:
chromosome: 5
Exon count:
4
Sequence:
Chromosome: 5; NC_003076.8 (1742994..1745245, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Duplicated homeodomain-like superfamily protein Neighboring gene tRNA-Arg Neighboring gene ncRNA Neighboring gene RING/U-box superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. NIK1-mediated translation suppression functions as a plant antiviral immunity mechanism. Zorzatto C, et al. Nature, 2015 Apr 30. PMID 25707794, Free PMC Article
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001085067.2
NM_001342836.1
NM_001342837.1
NM_001342838.1
NM_120662.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Myb/SANT-like DNA-binding domain protein
NP_001078536.1
  • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11290.1); Has 881 Blast hits to 512 proteins in 30 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 38; Plants - 833; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
NP_196199.1
  • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11290.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    1742994..1745245 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_120662.3 → NP_196199.1  Myb/SANT-like DNA-binding domain protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_196199.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FFJ8
    UniProtKB/TrEMBL
    A0A178UE54, A0A5S9Y2G0
    Conserved Domains (1) summary
    pfam12776
    Location:7 → 100
    Myb_DNA-bind_3; Myb/SANT-like DNA-binding domain

  2. NM_001085067.2 → NP_001078536.1  Myb/SANT-like DNA-binding domain protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078536.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FFJ8
    UniProtKB/TrEMBL
    A0A178UE54, A0A5S9Y2G0
    Conserved Domains (1) summary
    pfam12776
    Location:7 → 100
    Myb_DNA-bind_3; Myb/SANT-like DNA-binding domain

  3. NM_001342836.1 → NP_001332327.1  Myb/SANT-like DNA-binding domain protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FFJ8
    UniProtKB/TrEMBL
    A0A178UE54, A0A5S9Y2G0
    Conserved Domains (1) summary
    pfam12776
    Location:7 → 100
    Myb_DNA-bind_3; Myb/SANT-like DNA-binding domain

  4. NM_001342837.1 → NP_001332326.1  Myb/SANT-like DNA-binding domain protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FFJ8
    UniProtKB/TrEMBL
    A0A178UE54, A0A5S9Y2G0
    Conserved Domains (1) summary
    pfam12776
    Location:7 → 100
    Myb_DNA-bind_3; Myb/SANT-like DNA-binding domain

  5. NM_001342838.1 → NP_001332325.1  Myb/SANT-like DNA-binding domain protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FFJ8
    UniProtKB/TrEMBL
    A0A178UE54, A0A5S9Y2G0
    Conserved Domains (1) summary
    pfam12776
    Location:7 → 100
    Myb_DNA-bind_3; Myb/SANT-like DNA-binding domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FFJ8.1

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