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G18E autophagy-related protein 18E [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830397, updated on 18-Sep-2024

Summary

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Official Symbol
G18E
Official Full Name
autophagy-related protein 18E
Primary source
TAIR:AT5G05150
Locus tag
AT5G05150
See related
Araport:AT5G05150
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18E; ATATG18E; ATG18E; autophagy-related gene 18E; K2A11.2; K2A11_2
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Genomic context

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See G18E in Genome Data Viewer
Location:
chromosome: 5
Exon count:
3
Sequence:
Chromosome: 5; NC_003076.8 (1524699..1526199, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene DNA/RNA helicase protein Neighboring gene Transcription elongation factor (TFIIS) family protein Neighboring gene Leucine-rich repeat protein kinase family protein Neighboring gene Cellulose synthase family protein Neighboring gene myosin heavy chain, striated protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
autophagy-related protein 18E
NP_196134.1
  • autophagy-related gene 18E (G18E); CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943); BEST Arabidopsis thaliana protein match is: homolog of yeast autophagy 18 (ATG18) D (TAIR:AT3G56440.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    1524699..1526199 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_120597.2 → NP_196134.1  autophagy-related protein 18E [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_196134.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FHK8
    UniProtKB/TrEMBL
    A0A178UHS7
    Conserved Domains (3) summary
    COG2319
    Location:166 → 279
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:165 → 201
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:102 → 279
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FHK8.1

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