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DNAse I-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830380, updated on 18-Sep-2024

Summary

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Official Full Name
DNAse I-like superfamily protein
Primary source
TAIR:AT5G04980
Locus tag
AT5G04980
See related
Araport:AT5G04980
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MUG13.16; MUG13_16
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Genomic context

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Location:
chromosome: 5
Exon count:
8
Sequence:
Chromosome: 5; NC_003076.8 (1468227..1471071, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Plant invertase/pectin methylesterase inhibitor superfamily Neighboring gene Plant invertase/pectin methylesterase inhibitor superfamily Neighboring gene SAD1/UNC-84 domain protein 1 Neighboring gene translocon at the outer envelope membrane of chloroplasts 34 Neighboring gene clathrin adaptor complexes medium subunit family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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NM_001085060.2
NM_001342800.1
NM_120580.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables inositol-polyphosphate 5-phosphatase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in phosphatidylinositol dephosphorylation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
DNAse I-like superfamily protein
NP_001078529.1
  • DNAse I-like superfamily protein; FUNCTIONS IN: hydrolase activity, inositol or phosphatidylinositol phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Inositol polyphosphate related phosphatase (InterPro:IPR000300), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: DNAse I-like superfamily protein (TAIR:AT5G65090.1); Has 2300 Blast hits to 2056 proteins in 220 species: Archae - 0; Bacteria - 0; Metazoa - 750; Fungi - 552; Plants - 689; Viruses - 0; Other Eukaryotes - 309 (source: NCBI BLink).
NP_196117.2
  • DNAse I-like superfamily protein; FUNCTIONS IN: hydrolase activity, inositol or phosphatidylinositol phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Inositol polyphosphate related phosphatase (InterPro:IPR000300), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: DNAse I-like superfamily protein (TAIR:AT5G65090.1); Has 2295 Blast hits to 2058 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 744; Fungi - 561; Plants - 687; Viruses - 0; Other Eukaryotes - 303 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    1468227..1471071 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001342799.1 → NP_001332351.1  DNAse I-like superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UNY2, A0A5S9Y1G9

  2. NM_001085060.2 → NP_001078529.1  DNAse I-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078529.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A8MR21, F4JXT0, Q9FF76
    UniProtKB/TrEMBL
    A0A178UNY2, A0A5S9Y1G9
    Conserved Domains (1) summary
    cl00490
    Location:36 → 456
    EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily

  3. NM_120580.3 → NP_196117.2  DNAse I-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_196117.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UNY2, A0A5S9Y1G9
    Conserved Domains (1) summary
    cl00490
    Location:7 → 427
    EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily

  4. NM_001342800.1 → NP_001332352.1  DNAse I-like superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UM20, A0A1P8BGP3
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A8MR21.1

Gene LinkOut

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