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Ankyrin repeat family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830346, updated on 18-Sep-2024

Summary

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Official Full Name
Ankyrin repeat family protein
Primary source
TAIR:AT5G04680
Locus tag
AT5G04680
See related
Araport:AT5G04680
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T1E3.40; T1E3_40
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Genomic context

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Location:
chromosome: 5
Exon count:
7
Sequence:
Chromosome: 5; NC_003076.8 (1345688..1348895, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Ankyrin repeat family protein Neighboring gene Ankyrin repeat family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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NM_120550.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Ankyrin repeat family protein
NP_196088.2
  • Ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT5G04700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    1345688..1348895 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001342785.1 → NP_001332497.1  Ankyrin repeat family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BH49, A0A5S9Y1P9, A0A654FYE2

  2. NM_001342784.1 → NP_001332496.1  Ankyrin repeat family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BH48, A0A5S9Y1P9, A0A654FYE2

  3. NM_001342786.1 → NP_001332498.1  Ankyrin repeat family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BH58, A0A5S9Y1P9, A0A654FYE2

  4. NM_120550.4 → NP_196088.2  Ankyrin repeat family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_196088.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4JXN9, Q9LZ29
    Conserved Domains (6) summary
    cd00204
    Location:75 → 192
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:75 → 165
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:139 → 192
    Ank_4; Ankyrin repeats (many copies)
    pfam13962
    Location:518 → 635
    PGG; Domain of unknown function
    sd00045
    Location:102 → 136
    ANK; ANK repeat [structural motif]
    cl23831
    Location:228 → 353
    Csm4_III-A; CRISPR/Cas system-associated RAMP superfamily protein Csm4
Nucleotide Protein
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