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RING/U-box superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830324, updated on 18-Sep-2024

Summary

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Official Full Name
RING/U-box superfamily protein
Primary source
TAIR:AT5G04460
Locus tag
AT5G04460
See related
Araport:AT5G04460
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T19N18.3
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Genomic context

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Location:
chromosome: 5
Exon count:
9
Sequence:
Chromosome: 5; NC_003076.8 (1259435..1264025)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene binding to TOMV RNA 1L (long form) Neighboring gene RAP release 2, galactose-binding-like domain protein, putative (DUF1997) Neighboring gene uncharacterized protein Neighboring gene cyclin-dependent protein kinase inhibitor Neighboring gene miscRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Myosin-driven transport network in plants. Kurth EG, et al. Proc Natl Acad Sci U S A, 2017 Feb 21. PMID 28096376, Free PMC Article
  2. Identification of Arabidopsis SUMO-interacting proteins that regulate chromatin activity and developmental transitions. Elrouby N, et al. Proc Natl Acad Sci U S A, 2013 Dec 3. PMID 24255109, Free PMC Article
  3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

NM_001203295.1
NM_001203296.1
NM_120528.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables SUMO binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables myosin XI tail binding IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
RING/U-box superfamily protein
NP_001190224.1
  • RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: Ring/U-Box superfamily protein (TAIR:AT2G27950.1).
NP_001190225.1
  • RING/U-box superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: Ring/U-Box superfamily protein (TAIR:AT2G27950.1).
NP_001318480.1
  • RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: Ring/U-Box superfamily protein (TAIR:AT2G27950.1); Has 3702 Blast hits to 3505 proteins in 331 species: Archae - 0; Bacteria - 182; Metazoa - 2128; Fungi - 130; Plants - 551; Viruses - 33; Other Eukaryotes - 678 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    1259435..1264025
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001342774.1 → NP_001318480.1  RING/U-box superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UEL7, A0A5S9Y1X2, F4JWA1

  2. NM_001342775.1 → NP_001331156.1  RING/U-box superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UEL7, A0A5S9Y1X2, F4JWA1

  3. NM_001342776.1 → NP_001331157.1  RING/U-box superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BD10, Q9LZ79

  4. NM_001203296.1 → NP_001190225.1  RING/U-box superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190225.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4JWA3, Q9LZ79
    Conserved Domains (1) summary
    TIGR00844
    Location:141 → 294
    c_cpa1; na(+)/h(+) antiporter

  5. NM_001203295.1 → NP_001190224.1  RING/U-box superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190224.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UEL7, A0A5S9Y1X2, F4JWA1
    Conserved Domains (1) summary
    pfam13920
    Location:807 → 856
    zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)

  6. NM_120528.3 → NP_196066.2  RING/U-box superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_196066.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UEL7, A0A5S9Y1X2, F4JWA1
    Conserved Domains (1) summary
    pfam13920
    Location:807 → 856
    zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)
Nucleotide Protein
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