U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

BTR1L binding to TOMV RNA 1L (long form) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830322, updated on 18-Sep-2024

Summary

Official Symbol
BTR1L
Official Full Name
binding to TOMV RNA 1L (long form)
Primary source
TAIR:AT5G04430
Locus tag
AT5G04430
See related
Araport:AT5G04430
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
BINDING TO TOMV RNA 1; binding to TOMV RNA 1L (long form); BINDING TO TOMV RNA 1S (SHORT FORM); BTR1; BTR1S; T19N18.7
Summary
Gene model AT5G04430.1 produces active protein. (BTS1S). Binds to ToMV genomic RNA and prevents viral multiplication.
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See BTR1L in Genome Data Viewer
Location:
chromosome: 5
Exon count:
9
Sequence:
Chromosome: 5; NC_003076.8 (1250248..1253953, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene NAC domain containing protein 2 Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene RAP release 2, galactose-binding-like domain protein, putative (DUF1997) Neighboring gene RING/U-box superfamily protein

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General protein information

Preferred Names
binding to TOMV RNA 1L (long form)
NP_196063.1
  • BINDING TO TOMV RNA 1S (SHORT FORM) (BTR1S); FUNCTIONS IN: single-stranded RNA binding, nucleic acid binding; INVOLVED IN: RNA splicing, regulation of viral protein levels in host cell; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: KH domain-containing protein (TAIR:AT4G10070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
NP_850764.1
  • binding to TOMV RNA 1L (long form) (BTR1L); CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein (TAIR:AT5G15270.1); Has 5613 Blast hits to 2614 proteins in 213 species: Archae - 0; Bacteria - 8; Metazoa - 3980; Fungi - 530; Plants - 787; Viruses - 0; Other Eukaryotes - 308 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    1250248..1253953 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_120525.4NP_196063.1  binding to TOMV RNA 1L (long form) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_196063.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B9DH67, F4JW99, Q9LZ82
    UniProtKB/TrEMBL
    A0A178U8H7, A0A7G2F758
    Conserved Domains (3) summary
    cd22437
    Location:123191
    KH-I_BTR1_rpt2; second type I K homology (KH) RNA-binding domain found in Arabidopsis thaliana protein BTR1 and similar proteins
    cd22513
    Location:34106
    KH-I_BTR1_rpt1; first type I K homology (KH) RNA-binding domain found in Arabidopsis thaliana protein BTR1 and similar proteins
    cd22514
    Location:234304
    KH-I_BTR1_rpt3; third type I K homology (KH) RNA-binding domain found in Arabidopsis thaliana protein BTR1 and similar proteins
  2. NM_180433.3NP_850764.1  binding to TOMV RNA 1L (long form) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850764.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178U9H2, A0A5S9Y1L5
    Conserved Domains (3) summary
    cd22437
    Location:123191
    KH-I_BTR1_rpt2; second type I K homology (KH) RNA-binding domain found in Arabidopsis thaliana protein BTR1 and similar proteins
    cd22513
    Location:34106
    KH-I_BTR1_rpt1; first type I K homology (KH) RNA-binding domain found in Arabidopsis thaliana protein BTR1 and similar proteins
    cd22514
    Location:255325
    KH-I_BTR1_rpt3; third type I K homology (KH) RNA-binding domain found in Arabidopsis thaliana protein BTR1 and similar proteins