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Histone superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830164, updated on 18-Sep-2024

Summary

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Official Full Name
Histone superfamily protein
Primary source
TAIR:AT4G40030
Locus tag
AT4G40030
See related
Araport:AT4G40030
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
H3.3; histone 3.3; T5J17.200; T5J17_200
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Genomic context

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Location:
chromosome: 4
Exon count:
4
Sequence:
Chromosome: 4; NC_003075.7 (18555532..18557106, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Myosin heavy chain-related protein Neighboring gene Histone superfamily protein Neighboring gene Microsomal signal peptidase 12 kDa subunit (SPC12)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The histone H3 variant H3.3 regulates gene body DNA methylation in Arabidopsis thaliana. Wollmann H, et al. Genome Biol, 2017 May 18. PMID 28521766, Free PMC Article
  2. Delineation of metabolic gene clusters in plant genomes by chromatin signatures. Yu N, et al. Nucleic Acids Res, 2016 Mar 18. PMID 26895889, Free PMC Article
  3. Mechanism of DNA methylation-directed histone methylation by KRYPTONITE. Du J, et al. Mol Cell, 2014 Aug 7. PMID 25018018, Free PMC Article
  4. ATXR5 and ATXR6 are H3K27 monomethyltransferases required for chromatin structure and gene silencing. Jacob Y, et al. Nat Struct Mol Biol, 2009 Jul. PMID 19503079, Free PMC Article
  5. PRMT11: a new Arabidopsis MBD7 protein partner with arginine methyltransferase activity. Scebba F, et al. Plant J, 2007 Oct. PMID 17711414

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001085047.2
NM_001085048.2
NM_001342564.1
NM_120167.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
  
enables structural constituent of chromatin IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of nucleosome IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in plasma membrane HDA PubMed 

General protein information

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Preferred Names
Histone superfamily protein
NP_001078516.1
  • Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleosome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G10980.1); Has 14638 Blast hits to 14630 proteins in 7251 species: Archae - 0; Bacteria - 0; Metazoa - 10605; Fungi - 2037; Plants - 1272; Viruses - 0; Other Eukaryotes - 724 (source: NCBI BLink).
NP_001078517.1
  • Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleosome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G10980.1); Has 14600 Blast hits to 14592 proteins in 7243 species: Archae - 0; Bacteria - 0; Metazoa - 10603; Fungi - 2037; Plants - 1258; Viruses - 0; Other Eukaryotes - 702 (source: NCBI BLink).
NP_195713.1
  • Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleosome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G10980.1); Has 14600 Blast hits to 14592 proteins in 7243 species: Archae - 0; Bacteria - 0; Metazoa - 10603; Fungi - 2037; Plants - 1258; Viruses - 0; Other Eukaryotes - 702 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    18555532..18557106 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_120167.4 → NP_195713.1  Histone superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_195713.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P59169, Q6NR95
    UniProtKB/TrEMBL
    A0A178UM09, A0A384KRT1, A0A5S9WUL8, A0A654EQW3, B9DGR9
    Conserved Domains (1) summary
    PTZ00018
    Location:1 → 136
    PTZ00018; histone H3; Provisional

  2. NM_001085047.2 → NP_001078516.1  Histone superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078516.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9WUL8, A0A654EQW3, A0A654FX83, A8MRL0
    Conserved Domains (1) summary
    PTZ00018
    Location:29 → 164
    PTZ00018; histone H3; Provisional

  3. NM_001085048.2 → NP_001078517.1  Histone superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078517.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P59169, Q6NR95
    UniProtKB/TrEMBL
    A0A178UM09, A0A384KRT1, A0A5S9WUL8, A0A654EQW3, B9DGR9
    Conserved Domains (1) summary
    PTZ00018
    Location:1 → 136
    PTZ00018; histone H3; Provisional

  4. NM_001342564.1 → NP_001328124.1  Histone superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P59169, Q6NR95
    UniProtKB/TrEMBL
    A0A178UM09, A0A384KRT1, A0A5S9WUL8, A0A654EQW3, B9DGR9
    Conserved Domains (1) summary
    PTZ00018
    Location:1 → 136
    PTZ00018; histone H3; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P59169.2

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases
Research Materials