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TLD-domain containing nucleolar protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830146, updated on 18-Sep-2024

Summary

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Official Full Name
TLD-domain containing nucleolar protein
Primary source
TAIR:AT4G39870
Locus tag
AT4G39870
See related
Araport:AT4G39870
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T5J17.40; T5J17_40
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Genomic context

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Location:
chromosome: 4
Exon count:
8
Sequence:
Chromosome: 4; NC_003075.7 (18501877..18504487)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene hematological/neurological-like protein Neighboring gene ncRNA Neighboring gene tRNA-Arg Neighboring gene Ribosomal protein L23/L15e family protein Neighboring gene RAB GTPase homolog H1C

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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NM_001204045.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
TLD-domain containing nucleolar protein
NP_001190974.1
  • TLD-domain containing nucleolar protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TLDc (InterPro:IPR006571); BEST Arabidopsis thaliana protein match is: TLD-domain containing nucleolar protein (TAIR:AT2G05590.2).
NP_195697.3
  • TLD-domain containing nucleolar protein; CONTAINS InterPro DOMAIN/s: TLDc (InterPro:IPR006571); BEST Arabidopsis thaliana protein match is: TLD-domain containing nucleolar protein (TAIR:AT2G05590.2); Has 2250 Blast hits to 2105 proteins in 277 species: Archae - 0; Bacteria - 56; Metazoa - 1073; Fungi - 317; Plants - 190; Viruses - 32; Other Eukaryotes - 582 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    18501877..18504487
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_120150.6 → NP_195697.3  TLD-domain containing nucleolar protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_195697.3

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V5T7, A0A5S9Y069, Q8GUN9
    Conserved Domains (1) summary
    pfam07534
    Location:236 → 370
    TLD; TLD

  2. NM_001204045.1 → NP_001190974.1  TLD-domain containing nucleolar protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190974.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V5T7, A0A5S9Y069, Q8GUN9
    Conserved Domains (1) summary
    pfam07534
    Location:236 → 370
    TLD; TLD
Nucleotide Protein
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