U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ATRER1A Rer1 family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830077, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
ATRER1A
Official Full Name
Rer1 family protein
Primary source
TAIR:AT4G39220
Locus tag
AT4G39220
See related
Araport:AT4G39220
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T22F8.120; T22F8_120
Summary
Key player of retrieval of ER membrane proteins
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See ATRER1A in Genome Data Viewer
Location:
chromosome: 4
Exon count:
4
Sequence:
Chromosome: 4; NC_003075.7 (18263599..18265771)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Ribosomal protein S25 family protein Neighboring gene Glucose-1-phosphate adenylyltransferase family protein Neighboring gene NmrA-like negative transcriptional regulator family protein Neighboring gene uncharacterized protein Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene RAD-like 1

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Membrane protein retrieval from the Golgi apparatus to the endoplasmic reticulum (ER): characterization of the RER1 gene product as a component involved in ER localization of Sec12p. Sato K, et al. Mol Biol Cell, 1995 Nov. PMID 8589449, Free PMC Article
  2. The Arabidopsis thaliana RER1 gene family: its potential role in the endoplasmic reticulum localization of membrane proteins. Sato K, et al. Plant Mol Biol, 1999 Dec. PMID 10737146
  3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

NM_120082.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
Rer1 family protein
NP_195633.1
  • ATRER1A; CONTAINS InterPro DOMAIN/s: Retrieval of early ER protein Rer1 (InterPro:IPR004932); BEST Arabidopsis thaliana protein match is: endoplasmatic reticulum retrieval protein 1B (TAIR:AT2G21600.1); Has 516 Blast hits to 513 proteins in 212 species: Archae - 0; Bacteria - 0; Metazoa - 155; Fungi - 150; Plants - 130; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    18263599..18265771
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001342528.1 → NP_001329643.1  Rer1 family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O48670
    UniProtKB/TrEMBL
    A0A178UZZ3, A0A5S9Y0A2
    Conserved Domains (1) summary
    pfam03248
    Location:17 → 181
    Rer1; Rer1 family

  2. NM_120082.4 → NP_195633.1  Rer1 family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_195633.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O48670
    UniProtKB/TrEMBL
    A0A178UZZ3, A0A5S9Y0A2
    Conserved Domains (1) summary
    pfam03248
    Location:17 → 181
    Rer1; Rer1 family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O48670.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Molecular Biology Databases
Research Materials
Tools