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GH9B16 glycosyl hydrolase 9B16 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830054, updated on 18-Sep-2024

Summary

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Official Symbol
GH9B16
Official Full Name
glycosyl hydrolase 9B16
Primary source
TAIR:AT4G38990
Locus tag
AT4G38990
See related
Araport:AT4G38990
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AtGH9B16; F19H22.90; F19H22_90; glycosyl hydrolase 9B16
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Genomic context

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See GH9B16 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
6
Sequence:
Chromosome: 4; NC_003075.7 (18168676..18170949, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene fructose-bisphosphate aldolase 2 Neighboring gene uncharacterized protein Neighboring gene glycosyl hydrolase 9B17 Neighboring gene glycosyl hydrolase 9B18

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables cellulase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
glycosyl hydrolase 9B16
NP_195610.3
  • glycosyl hydrolase 9B16 (GH9B16); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9B17 (TAIR:AT4G39000.1); Has 1522 Blast hits to 1511 proteins in 198 species: Archae - 2; Bacteria - 400; Metazoa - 176; Fungi - 17; Plants - 897; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    18168676..18170949 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001342521.1 → NP_001329141.1  glycosyl hydrolase 9B16 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4JUJ7, Q9SVJ4
    UniProtKB/TrEMBL
    A0A5S9Y0A3

  2. NM_120059.3 → NP_195610.3  glycosyl hydrolase 9B16 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_195610.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SVJ4
    Conserved Domains (1) summary
    cl02959
    Location:1 → 335
    Glyco_hydro_9; Glycosyl hydrolase family 9
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SVJ4.1

Gene LinkOut

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