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nucleoporin (DUF3414) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830031, updated on 18-Sep-2024

Summary

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Official Full Name
nucleoporin (DUF3414)
Primary source
TAIR:AT4G38760
Locus tag
AT4G38760
See related
Araport:AT4G38760
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T9A14.40; T9A14_40
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Genomic context

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Location:
chromosome: 4
Exon count:
32
Sequence:
Chromosome: 4; NC_003075.7 (18084652..18096218, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene magnesium transporter, putative (DUF803) Neighboring gene rotamase CYP 1 Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene proline-rich protein 4 Neighboring gene pre-mRNA-processing-splicing factor-like protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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NM_120036.6

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables structural constituent of nuclear pore IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
nucleoporin (DUF3414)
NP_195587.5
  • Protein of unknown function (DUF3414); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3414 (InterPro:IPR021827); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G10845.1); Has 113 Blast hits to 108 proteins in 52 species: Archae - 0; Bacteria - 2; Metazoa - 61; Fungi - 10; Plants - 37; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    18084652..18096218 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_120036.6 → NP_195587.5  nucleoporin (DUF3414) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_195587.5

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UWW7, A0A654FWR1, F4JUG3
    Conserved Domains (1) summary
    cl29134
    Location:36 → 770
    Nup192; Nuclear pore complex scaffold, nucleoporins 186/192/205
Nucleotide Protein
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