U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

PLC-like phosphodiesterases superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830025, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
PLC-like phosphodiesterases superfamily protein
Primary source
TAIR:AT4G38690
Locus tag
AT4G38690
See related
Araport:AT4G38690
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T9A14.2
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 4
Exon count:
1
Sequence:
Chromosome: 4; NC_003075.7 (18074320..18075957, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Pathogenesis-related thaumatin superfamily protein Neighboring gene Pathogenesis-related thaumatin superfamily protein Neighboring gene glycine rich protein 2 Neighboring gene Disease resistance-responsive (dirigent-like protein) family protein Neighboring gene glycine-rich protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis. Klopffleisch K, et al. Mol Syst Biol, 2011 Sep 27. PMID 21952135, Free PMC Article
  2. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
  3. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

NM_120030.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables phosphoric diester hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in lipid metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  
located_in plasma membrane HDA PubMed 

General protein information

Go to the top of the page Help
Preferred Names
PLC-like phosphodiesterases superfamily protein
NP_195581.1
  • PLC-like phosphodiesterases superfamily protein; FUNCTIONS IN: phospholipase C activity, phosphoric diester hydrolase activity; INVOLVED IN: intracellular signaling pathway, N-terminal protein myristoylation, lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase C, phosphatidylinositol-specific, X domain (InterPro:IPR000909), PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946); BEST Arabidopsis thaliana protein match is: PLC-like phosphodiesterases superfamily protein (TAIR:AT4G34920.1); Has 888 Blast hits to 888 proteins in 280 species: Archae - 0; Bacteria - 676; Metazoa - 61; Fungi - 70; Plants - 52; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    18074320..18075957 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_120030.4 → NP_195581.1  PLC-like phosphodiesterases superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_195581.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UXV4, Q9SZP6
    Conserved Domains (1) summary
    cd08619
    Location:33 → 313
    PI-PLCXDc_plant; Catalytic domain of phosphatidylinositol-specific phospholipase C, X domain containing proteins found in plants
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Molecular Biology Databases
Research Materials
Tools