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IYO RPAP1-like, carboxy-terminal protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830001, updated on 18-Sep-2024

Summary

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Official Symbol
IYO
Official Full Name
RPAP1-like, carboxy-terminal protein
Primary source
TAIR:AT4G38440
Locus tag
AT4G38440
See related
Araport:AT4G38440
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F22I13.210; F22I13_210; MINIYO
Summary
Encodes MINIYO (IYO), a positive regulator of transcriptional elongation that is essential for cells to initiate differentiation.
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Genomic context

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See IYO in Genome Data Viewer
Location:
chromosome: 4
Exon count:
10
Sequence:
Chromosome: 4; NC_003075.7 (17989067..17994727)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene SKU5 similar 9 Neighboring gene rho guanyl-nucleotide exchange factor 1 Neighboring gene geranylgeranyl reductase Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A molecular switch for initiating cell differentiation in Arabidopsis. Sanmartín M, et al. Curr Biol, 2011 Jun 21. PMID 21620701
  2. Genome-wide identification of EMBRYO-DEFECTIVE (EMB) genes required for growth and development in Arabidopsis. Meinke DW. New Phytol, 2020 Apr. PMID 31334862
  3. A Role for MINIYO and QUATRE-QUART2 in the Assembly of RNA Polymerases II, IV, and V in Arabidopsis. Li Y, et al. Plant Cell, 2018 Feb. PMID 29352065, Free PMC Article
  4. Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana. Van Leene J, et al. Mol Syst Biol, 2010 Aug 10. PMID 20706207, Free PMC Article
  5. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_120006.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within cell differentiation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
RPAP1-like, carboxy-terminal protein
NP_195557.2
  • LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II-associated protein 1, C-terminal (InterPro:IPR013929), RNA polymerase II-associated protein 1, N-terminal (InterPro:IPR013930); Has 276 Blast hits to 220 proteins in 102 species: Archae - 0; Bacteria - 2; Metazoa - 151; Fungi - 65; Plants - 41; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    17989067..17994727
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_120006.3 → NP_195557.2  RPAP1-like, carboxy-terminal protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_195557.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8GYU3, Q9SVE1, Q9SZM5
    UniProtKB/TrEMBL
    A0A178UUS6, A0A654FWY4
    Conserved Domains (2) summary
    pfam08620
    Location:318 → 396
    RPAP1_C; RPAP1-like, C-terminal
    pfam08621
    Location:210 → 254
    RPAP1_N; RPAP1-like, N-terminal
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8GYU3.1

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