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FRS9 FAR1-related sequence 9 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829973, updated on 18-Sep-2024

Summary

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Official Symbol
FRS9
Official Full Name
FAR1-related sequence 9
Primary source
TAIR:AT4G38170
Locus tag
AT4G38170
See related
Araport:AT4G38170
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F20D10.290; F20D10_290; FAR1-related sequence 9
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Genomic context

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See FRS9 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
3
Sequence:
Chromosome: 4; NC_003075.7 (17904532..17906821)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene RING/U-box superfamily protein Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene Mitochondrial transcription termination factor family protein Neighboring gene FAR1-related sequence 5 Neighboring gene ncRNA Neighboring gene cellulose synthase like D4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
  2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

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Interactions

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General gene information

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NM_119978.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables zinc ion binding  
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription  
Component Evidence Code Pubs
is_active_in cellular_component  

General protein information

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Preferred Names
FAR1-related sequence 9
NP_195530.2
  • FAR1-related sequence 9 (FRS9); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PMZ-type (InterPro:IPR006564), MULE transposase, conserved domain (InterPro:IPR018289), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: FAR1-related sequence 5 (TAIR:AT4G38180.1); Has 1073 Blast hits to 1051 proteins in 28 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 2; Plants - 1067; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    17904532..17906821
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_119978.4 → NP_195530.2  FAR1-related sequence 9 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_195530.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WN40, Q9SZL7
    UniProtKB/TrEMBL
    A0A654FWP0
    Conserved Domains (3) summary
    PLN03097
    Location:21 → 461
    FHY3; Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
    pfam04434
    Location:345 → 381
    SWIM; SWIM zinc finger
    pfam10551
    Location:68 → 150
    MULE; MULE transposase domain
Protein Accession Links
GenPept Link UniProtKB Link
Q9SZL7.2

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