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ARM repeat superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829968, updated on 18-Sep-2024

Summary

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Official Full Name
ARM repeat superfamily protein
Primary source
TAIR:AT4G38120
Locus tag
AT4G38120
See related
Araport:AT4G38120
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F20D10.240; F20D10_240
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Genomic context

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Location:
chromosome: 4
Exon count:
26
Sequence:
Chromosome: 4; NC_003075.7 (17888501..17896255, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ribosomal protein S5 domain protein Neighboring gene exportin-4 protein Neighboring gene CURVATURE THYLAKOID 1D-like protein Neighboring gene histone deacetylase 1 Neighboring gene RING/U-box superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A proteomics dissection of Arabidopsis thaliana vacuoles isolated from cell culture. Jaquinod M, et al. Mol Cell Proteomics, 2007 Mar. PMID 17151019, Free PMC Article
  2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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NM_001125665.1
NM_001342481.1
NM_119973.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in plant-type vacuole HDA PubMed 

General protein information

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Preferred Names
ARM repeat superfamily protein
NP_001119137.1
  • ARM repeat superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_195525.2
  • ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-type fold (InterPro:IPR016024); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    17888501..17896255 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001342480.1 → NP_001328438.1  ARM repeat superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B4P1, A0A5S9Y0I7, A0A654FWJ7
    Conserved Domains (2) summary
    sd00044
    Location:787 → 824
    HEAT; HEAT repeat [structural motif]
    pfam13251
    Location:392 → 577
    DUF4042; Domain of unknown function (DUF4042)

  2. NM_119973.4 → NP_195525.2  ARM repeat superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_195525.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9Y0I7, F4JSY2
    Conserved Domains (4) summary
    cd00020
    Location:750 → 859
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
    pfam13251
    Location:389 → 574
    DUF4042; Domain of unknown function (DUF4042)
    pfam13646
    Location:794 → 907
    HEAT_2; HEAT repeats
    sd00044
    Location:784 → 821
    HEAT; HEAT repeat [structural motif]

  3. NM_001342481.1 → NP_001328439.1  ARM repeat superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B4N5, A0A5S9Y0I7

  4. NM_001125665.1 → NP_001119137.1  ARM repeat superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001119137.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q494P8, Q9SZL2
    Conserved Domains (1) summary
    pfam13251
    Location:392 → 446
    DUF4042; Domain of unknown function (DUF4042)
Nucleotide Protein
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