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Rhamnogalacturonate lyase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829959, updated on 18-Sep-2024

Summary

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Official Full Name
Rhamnogalacturonate lyase family protein
Primary source
TAIR:AT4G38030
Locus tag
AT4G38030
See related
Araport:AT4G38030
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F20D10.150; F20D10_150
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Genomic context

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Location:
chromosome: 4
Exon count:
13
Sequence:
Chromosome: 4; NC_003075.7 (17863073..17866730, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene DNA binding with one finger 4.7 Neighboring gene Pentatricopeptide repeat (PPR-like) superfamily protein Neighboring gene tRNA/rRNA methyltransferase (SpoU) family protein Neighboring gene Exostosin family protein Neighboring gene Xanthine/uracil permease family protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_119964.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
  
enables lyase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables rhamnogalacturonan endolyase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Rhamnogalacturonate lyase family protein
NP_195516.2
  • Rhamnogalacturonate lyase family protein; FUNCTIONS IN: lyase activity; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Rhamnogalacturonate lyase (InterPro:IPR010325), Carbohydrate-binding-like fold (InterPro:IPR013784), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: Rhamnogalacturonate lyase family protein (TAIR:AT2G22620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    17863073..17866730 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_119964.2 → NP_195516.2  Rhamnogalacturonate lyase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_195516.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V624, F4JSW8, Q9SZK3
    Conserved Domains (3) summary
    cd10316
    Location:369 → 462
    RGL4_M; Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase
    pfam14683
    Location:474 → 661
    CBM-like; Polysaccharide lyase family 4, domain III
    cl15675
    Location:52 → 236
    RGL4_N; N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase
Nucleotide Protein
Heading Accession and Version

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