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tRNA/rRNA methyltransferase (SpoU) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829958, updated on 18-Sep-2024

Summary

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Official Full Name
tRNA/rRNA methyltransferase (SpoU) family protein
Primary source
TAIR:AT4G38020
Locus tag
AT4G38020
See related
Araport:AT4G38020
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F20D10.140; F20D10_140
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Genomic context

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Location:
chromosome: 4
Exon count:
4
Sequence:
Chromosome: 4; NC_003075.7 (17861435..17863098)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene DNA binding with one finger 4.7 Neighboring gene Pentatricopeptide repeat (PPR-like) superfamily protein Neighboring gene Rhamnogalacturonate lyase family protein Neighboring gene Exostosin family protein Neighboring gene Xanthine/uracil permease family protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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NM_119963.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables RNA methyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
tRNA/rRNA methyltransferase (SpoU) family protein
NP_195515.2
  • tRNA/rRNA methyltransferase (SpoU) family protein; FUNCTIONS IN: RNA binding, RNA methyltransferase activity; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA/rRNA methyltransferase, SpoU (InterPro:IPR001537); Has 12174 Blast hits to 12170 proteins in 2688 species: Archae - 7; Bacteria - 9680; Metazoa - 153; Fungi - 96; Plants - 106; Viruses - 0; Other Eukaryotes - 2132 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    17861435..17863098
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_119963.4 → NP_195515.2  tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_195515.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V0A2, A0A5S9XZL5, A0A7G2FAT0, Q8GYL4
    Conserved Domains (1) summary
    cd18095
    Location:197 → 348
    SpoU-like_rRNA-MTase; SAM-dependent rRNA methylase related to SpoU-TrmH
Nucleotide Protein
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