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Rhamnogalacturonate lyase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829951, updated on 18-Sep-2024

Summary

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Official Full Name
Rhamnogalacturonate lyase family protein
Primary source
TAIR:AT4G37950
Locus tag
AT4G37950
See related
Araport:AT4G37950
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F20D10.70; F20D10_70
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Genomic context

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Location:
chromosome: 4
Exon count:
16
Sequence:
Chromosome: 4; NC_003075.7 (17844361..17849274)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene serine transhydroxymethyltransferase 1 Neighboring gene AGAMOUS-like 21 Neighboring gene cinnamyl alcohol dehydrogenase 6 Neighboring gene cinnamyl alcohol dehydrogenase 7

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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NM_001342465.1
NM_119956.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
  
enables lyase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables rhamnogalacturonan endolyase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Rhamnogalacturonate lyase family protein
NP_195508.2
  • Rhamnogalacturonate lyase family protein; CONTAINS InterPro DOMAIN/s: Rhamnogalacturonate lyase (InterPro:IPR010325), Carbohydrate-binding-like fold (InterPro:IPR013784), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: Rhamnogalacturonate lyase family protein (TAIR:AT2G22620.1); Has 315 Blast hits to 298 proteins in 69 species: Archae - 0; Bacteria - 55; Metazoa - 0; Fungi - 92; Plants - 168; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    17844361..17849274
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_119956.4 → NP_195508.2  Rhamnogalacturonate lyase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_195508.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V270, A0A384L9M5, A0A5S9XZZ7, Q84W85
    Conserved Domains (3) summary
    cd10316
    Location:372 → 470
    RGL4_M; Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase
    pfam06045
    Location:38 → 244
    Rhamnogal_lyase; Rhamnogalacturonate lyase family
    pfam14683
    Location:482 → 672
    CBM-like; Polysaccharide lyase family 4, domain III

  2. NM_001342465.1 → NP_001329850.1  Rhamnogalacturonate lyase family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V270, A0A384L9M5, A0A5S9XZZ7, Q84W85
    Conserved Domains (3) summary
    cd10316
    Location:372 → 470
    RGL4_M; Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase
    pfam06045
    Location:38 → 244
    Rhamnogal_lyase; Rhamnogalacturonate lyase family
    pfam14683
    Location:482 → 672
    CBM-like; Polysaccharide lyase family 4, domain III
Nucleotide Protein
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