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HAM4 GRAS family transcription factor [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829824, updated on 18-Sep-2024

Summary

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Official Symbol
HAM4
Official Full Name
GRAS family transcription factor
Primary source
TAIR:AT4G36710
Locus tag
AT4G36710
See related
Araport:AT4G36710
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AP22.56; AP22_56; Arabidopsis thaliana HAIRY MERISTEM 4; AtHAM4
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Genomic context

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See HAM4 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
1
Sequence:
Chromosome: 4; NC_003075.7 (17305758..17307648)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene U2 snRNP auxilliary factor, large subunit, splicing factor Neighboring gene RmlC-like cupins superfamily protein Neighboring gene ncRNA Neighboring gene HVA22-like protein K Neighboring gene G-box binding factor 1 Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. SCARECROW-LIKE15 interacts with HISTONE DEACETYLASE19 and is essential for repressing the seed maturation programme. Gao MJ, et al. Nat Commun, 2015 Jul 1. PMID 26129778, Free PMC Article
  2. Arabidopsis homologs of the petunia hairy meristem gene are required for maintenance of shoot and root indeterminacy. Engstrom EM, et al. Plant Physiol, 2011 Feb. PMID 21173022, Free PMC Article
  3. Control of plant stem cell function by conserved interacting transcriptional regulators. Zhou Y, et al. Nature, 2015 Jan 15. PMID 25363783, Free PMC Article
  4. Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses. Efroni I, et al. Dev Cell, 2013 Feb 25. PMID 23449474, Free PMC Article
  5. Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis. Klopffleisch K, et al. Mol Syst Biol, 2011 Sep 27. PMID 21952135, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. acts as an HDA19-associated regulator to repress embryonic traits in seedlings
    Title: SCARECROW-LIKE15 interacts with HISTONE DEACETYLASE19 and is essential for repressing the seed maturation programme.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_119835.6

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within cell differentiation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within regulation of DNA-templated transcription TAS
Traceable Author Statement
more info
 PubMed 
acts_upstream_of_or_within regulation of shoot system development IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
GRAS family transcription factor
NP_195389.4
  • GRAS family transcription factor; CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT4G00150.1); Has 2023 Blast hits to 1999 proteins in 291 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 2019; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    17305758..17307648
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_119835.6 → NP_195389.4  GRAS family transcription factor [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_195389.4

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O23210, Q8GX15
    UniProtKB/TrEMBL
    A0A178UVI6, A0A5S9XZN3
    Conserved Domains (1) summary
    pfam03514
    Location:122 → 485
    GRAS; GRAS domain family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O23210.3

Gene LinkOut

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