SEN1 Rhodanese/Cell cycle control phosphatase superfamily protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: SEN1
Official Full Name: Rhodanese/Cell cycle control phosphatase superfamily protein
Primary source: TAIR:AT4G35770
Locus tag: AT4G35770
See related: Araport:AT4G35770
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: ARABIDOPSIS THALIANA SENESCENCE 1; ATSEN1; DARK INDUCIBLE 1; DIN1; F4B14.3; SENESCENCE 1; SENESCENCE ASSOCIATED GENE 1
Summary: Senescence-associated gene that is strongly induced by phosphate starvation. Transcripts are differentially regulated at the level of mRNA stability at different times of day. mRNAs are targets of the mRNA degradation pathway mediated by the downstream (DST) instability determinant.
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Genomic context

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See SEN1 in Genome Data Viewer

Location:: chromosome: 4

Exon count:: 4

Sequence:: Chromosome: 4; NC_003075.7 (16944878..16946266)

Chromosome 4 - NC_003075.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Pathways from PubChem

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_001085027.2

Supported by ESTs:

NM_001085028.1

Supported by ESTs:

NM_001342368.1

Supported by ESTs:

NM_001342369.1

Supported by ESTs:

NM_001342370.1

Supported by ESTs:

NM_119743.4

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within response to jasmonic acid	IEP Inferred from Expression Pattern more info	PubMed
acts_upstream_of_or_within response to oxidative stress	IEP Inferred from Expression Pattern more info	PubMed
acts_upstream_of_or_within response to wounding	IEP Inferred from Expression Pattern more info	PubMed

Component	Evidence Code	Pubs
located_in chloroplast	IDA Inferred from Direct Assay more info	PubMed
located_in chloroplast	ISM Inferred from Sequence Model more info
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: Rhodanese/Cell cycle control phosphatase superfamily protein

NP_001078496.1

SENESCENCE 1 (SEN1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 6 processes; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: sulfurtransferase protein 16 (TAIR:AT5G66040.1); Has 254 Blast hits to 254 proteins in 81 species: Archae - 0; Bacteria - 104; Metazoa - 0; Fungi - 0; Plants - 144; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).

NP_001078497.1

SENESCENCE 1 (SEN1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 6 processes; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: sulfurtransferase protein 16 (TAIR:AT5G66040.1); Has 257 Blast hits to 257 proteins in 81 species: Archae - 0; Bacteria - 105; Metazoa - 0; Fungi - 0; Plants - 145; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).

NP_195302.1

SENESCENCE 1 (SEN1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 6 processes; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: sulfurtransferase protein 16 (TAIR:AT5G66040.1); Has 1680 Blast hits to 1680 proteins in 570 species: Archae - 16; Bacteria - 1250; Metazoa - 4; Fungi - 10; Plants - 192; Viruses - 0; Other Eukaryotes - 208 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003075.7 Reference assembly

Range

16944878..16946266

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_119743.4 → NP_195302.1 Rhodanese/Cell cycle control phosphatase superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_195302.1

Status: REVIEWED

UniProtKB/Swiss-Prot

F4JNT6, Q38852, Q38853, Q8LEW3

UniProtKB/TrEMBL

A0A178UYD5, A0A5S9Y169

Conserved Domains (1) summary

cl00125
Location:64 → 182

RHOD; Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins ...
NM_001085027.2 → NP_001078496.1 Rhodanese/Cell cycle control phosphatase superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_001078496.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A178UZU9

Conserved Domains (1) summary

cl00125
Location:64 → 159

RHOD; Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins ...
NM_001342368.1 → NP_001328861.1 Rhodanese/Cell cycle control phosphatase superfamily protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8B5Y0, C0Z358
NM_001342370.1 → NP_001328859.1 Rhodanese/Cell cycle control phosphatase superfamily protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8B5Y0, C0Z358
NM_001342369.1 → NP_001328860.1 Rhodanese/Cell cycle control phosphatase superfamily protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8B5Y3
NM_001085028.1 → NP_001078497.1 Rhodanese/Cell cycle control phosphatase superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_001078497.1

Status: REVIEWED

UniProtKB/TrEMBL

A8MRI9

Conserved Domains (1) summary

cl00125
Location:64 → 161

RHOD; Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins ...