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MRL1 Pentatricopeptide repeat (PPR) superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829635, updated on 18-Sep-2024

Summary

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Official Symbol
MRL1
Official Full Name
Pentatricopeptide repeat (PPR) superfamily protein
Primary source
TAIR:AT4G34830
Locus tag
AT4G34830
See related
Araport:AT4G34830
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F11I11.70; F11I11_70; MATURATION OF RBCL 1; PDE346; PIGMENT DEFECTIVE 346
Summary
Encodes MRL1, a conserved pentatricopeptide repeat protein, required for stabilization of rbcL mRNA.
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Genomic context

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See MRL1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
19
Sequence:
Chromosome: 4; NC_003075.7 (16599597..16606135, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene SAUR-like auxin-responsive protein family Neighboring gene SAUR-like auxin-responsive protein family Neighboring gene Phosphorylase superfamily protein Neighboring gene Chalcone and stilbene synthase family protein Neighboring gene Plant neutral invertase family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. MRL1, a conserved Pentatricopeptide repeat protein, is required for stabilization of rbcL mRNA in Chlamydomonas and Arabidopsis. Johnson X, et al. Plant Cell, 2010 Jan. PMID 20097872, Free PMC Article
  2. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
  3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. MRL1 controls the accumulation of the rbcL mRNA at a posttranscriptional stage and, hence, Rubisco biogenesis. [MRL1]
    Title: MRL1, a conserved Pentatricopeptide repeat protein, is required for stabilization of rbcL mRNA in Chlamydomonas and Arabidopsis.
Submit: New GeneRIF Correction

General gene information

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NM_119649.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within mRNA stabilization IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Pentatricopeptide repeat (PPR) superfamily protein
NP_195209.2
  • MATURATION OF RBCL 1 (MRL1); INVOLVED IN: mRNA stabilization; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: genomes uncoupled 1 (TAIR:AT2G31400.1); Has 45662 Blast hits to 13867 proteins in 283 species: Archae - 3; Bacteria - 43; Metazoa - 608; Fungi - 635; Plants - 42548; Viruses - 0; Other Eukaryotes - 1825 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    16599597..16606135 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_119649.5 → NP_195209.2  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_195209.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WLC6, Q0WVK9, Q6NLP9, Q9SW51, Q9SW52
    UniProtKB/TrEMBL
    A0A178V2I9, A0A5S9XZE0, A0A654FVK0, A0A7G2F344
    Conserved Domains (4) summary
    PLN03218
    Location:1 → 1089
    PLN03218; maturation of RBCL 1; Provisional
    TIGR00756
    Location:505 → 536
    PPR; pentatricopeptide repeat domain (PPR motif)
    sd00004
    Location:505 → 531
    PPR; PPR repeat [structural motif]
    pfam12854
    Location:566 → 599
    PPR_1; PPR repeat
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q0WLC6.2

Gene LinkOut

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