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NmrA-like negative transcriptional regulator family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829605, updated on 18-Sep-2024

Summary

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Official Full Name
NmrA-like negative transcriptional regulator family protein
Primary source
TAIR:AT4G34540
Locus tag
AT4G34540
See related
Araport:AT4G34540
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T4L20.120; T4L20_120
Summary
encodes a protein whose sequence is similar to pinoresinol-lariciresinol reductase from pine.
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Genomic context

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Location:
chromosome: 4
Exon count:
10
Sequence:
Chromosome: 4; NC_003075.7 (16498391..16502174)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene 3-ketoacyl-CoA synthase 17 Neighboring gene 3-ketoacyl-CoA synthase 18 Neighboring gene cryptochrome-interacting basic-helix-loop-helix 1 Neighboring gene F-box protein Neighboring gene Ribosomal protein S25 family protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Natural allelic variation of GVS1 confers diversity in the regulation of leaf senescence in Arabidopsis. Lyu JI, et al. New Phytol, 2019 Mar. PMID 30266040
  2. Evolution of plant defense mechanisms. Relationships of phenylcoumaran benzylic ether reductases to pinoresinol-lariciresinol and isoflavone reductases. Gang DR, et al. J Biol Chem, 1999 Mar 12. PMID 10066819
  3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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NM_119619.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables pinoresinol reductase activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within positive regulation of leaf senescence IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within response to hydroperoxide IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
NmrA-like negative transcriptional regulator family protein
NP_195180.1
  • NmrA-like negative transcriptional regulator family protein; FUNCTIONS IN: pinoresinol reductase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), NmrA-like (InterPro:IPR008030); BEST Arabidopsis thaliana protein match is: NmrA-like negative transcriptional regulator family protein (TAIR:AT1G75280.1); Has 2050 Blast hits to 2046 proteins in 499 species: Archae - 10; Bacteria - 767; Metazoa - 6; Fungi - 470; Plants - 578; Viruses - 7; Other Eukaryotes - 212 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    16498391..16502174
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_119619.2 → NP_195180.1  NmrA-like negative transcriptional regulator family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_195180.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O65679
    UniProtKB/TrEMBL
    A0A5S9XYL9
    Conserved Domains (2) summary
    pfam01370
    Location:10 → 207
    Epimerase; NAD dependent epimerase/dehydratase family
    pfam05368
    Location:10 → 235
    NmrA; NmrA-like family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O65679.2

Gene LinkOut

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