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CER9 RING/U-box superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829556, updated on 18-Sep-2024

Summary

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Official Symbol
CER9
Official Full Name
RING/U-box superfamily protein
Primary source
TAIR:AT4G34100
Locus tag
AT4G34100
See related
Araport:AT4G34100
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ECERIFERUM 9; F28A23.140; F28A23_140; SUD1; SUPPRESSOR OF DRY2 DEFECTS 1
Summary
Encodes a protein involved in cuticular wax biosynthesis. Lines carrying a recessive mutation in this locus have reduced chain-length distribution, weakly glaucous stem surface, and has reduced fertility in early flowers, non-spreading floret, downward cupped leaves, leaf waxes nearly pure C24 and C26 acid.
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Genomic context

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See CER9 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
9
Sequence:
Chromosome: 4; NC_003075.7 (16330366..16335247)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene cyclin delta-3 Neighboring gene myosin-4 protein (DUF641) Neighboring gene miscRNA Neighboring gene poly(A) binding protein 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The SUD1 gene encodes a putative E3 ubiquitin ligase and is a positive regulator of 3-hydroxy-3-methylglutaryl coenzyme a reductase activity in Arabidopsis. Doblas VG, et al. Plant Cell, 2013 Feb. PMID 23404890, Free PMC Article
  2. Arabidopsis ECERIFERUM9 involvement in cuticle formation and maintenance of plant water status. Lü S, et al. Plant Physiol, 2012 Jul. PMID 22635115, Free PMC Article
  3. Leaf Epicuticular Waxes of the Eceriferum Mutants in Arabidopsis. Jenks MA, et al. Plant Physiol, 1995 May. PMID 12228482, Free PMC Article
  4. Nt-acetylation-independent turnover of SQUALENE EPOXIDASE 1 by Arabidopsis DOA10-like E3 ligases. Etherington RD, et al. Plant Physiol, 2023 Oct 26. PMID 37427787, Free PMC Article
  5. VH1/BRL2 receptor-like kinase interacts with vascular-specific adaptor proteins VIT and VIK to influence leaf venation. Ceserani T, et al. Plant J, 2009 Mar. PMID 19000166, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. CER9 is the first described cuticle biosynthesis gene whose deficiency improves both plant response to water deficit and water use efficiency, indicating that CER9 may encode an important new cuticle-associated drought tolerance determinant. [CER9]
    Title: Arabidopsis ECERIFERUM9 involvement in cuticle formation and maintenance of plant water status.
  2. At4g34100 functions as a positive posttranscriptional regulator of the 3-hydroxy-3-methylglutaryl-CoA reductase activity.
    Title: The SUD1 gene encodes a putative E3 ubiquitin ligase and is a positive regulator of 3-hydroxy-3-methylglutaryl coenzyme a reductase activity in Arabidopsis.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001125641.1
NM_119571.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ubiquitin-protein transferase activity TAS
Traceable Author Statement
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in cuticle development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within cutin biosynthetic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within cutin-based cuticle development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within isoprenoid biosynthetic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within positive regulation of isopentenyl diphosphate biosynthetic process, mevalonate pathway IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within response to water deprivation IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within suberin biosynthetic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within wax biosynthetic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
is_active_in endoplasmic reticulum IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
RING/U-box superfamily protein
NP_001119113.1
  • RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT4G32670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_195136.3
  • RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT4G32670.1); Has 2169 Blast hits to 1906 proteins in 224 species: Archae - 0; Bacteria - 0; Metazoa - 966; Fungi - 273; Plants - 550; Viruses - 44; Other Eukaryotes - 336 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    16330366..16335247
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_119571.5 → NP_195136.3  RING/U-box superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_195136.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4JKK0, F4JKK1, O49494, Q0WLP2
    UniProtKB/TrEMBL
    A0A178UYZ5, A0A7G2F2R5
    Conserved Domains (1) summary
    COG5183
    Location:67 → 1069
    SSM4; E3 ubiquitin-protein ligase DOA10 [Posttranslational modification, protein turnover, chaperones]

  2. NM_001125641.1 → NP_001119113.1  RING/U-box superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001119113.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UWL5, A0A5S9XZ66
    Conserved Domains (1) summary
    COG5183
    Location:67 → 1068
    SSM4; E3 ubiquitin-protein ligase DOA10 [Posttranslational modification, protein turnover, chaperones]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F4JKK0.1

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