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cyclin delta-3 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829555, updated on 18-Sep-2024

Summary

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Official Full Name
cyclin delta-3
Primary source
TAIR:AT4G34090
Locus tag
AT4G34090
See related
Araport:AT4G34090
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F28A23.150; F28A23_150
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Genomic context

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Location:
chromosome: 4
Exon count:
10
Sequence:
Chromosome: 4; NC_003075.7 (16326883..16330224, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Calcium-binding EF-hand family protein Neighboring gene ncRNA Neighboring gene myosin-4 protein (DUF641) Neighboring gene RING/U-box superfamily protein Neighboring gene miscRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. PAB is an assembly chaperone that functions downstream of chaperonin 60 in the assembly of chloroplast ATP synthase coupling factor 1. Mao J, et al. Proc Natl Acad Sci U S A, 2015 Mar 31. PMID 25775508, Free PMC Article
  2. The oligomeric stromal proteome of Arabidopsis thaliana chloroplasts. Peltier JB, et al. Mol Cell Proteomics, 2006 Jan. PMID 16207701
  3. Quantitative proteomics of a chloroplast SRP54 sorting mutant and its genetic interactions with CLPC1 in Arabidopsis. Rutschow H, et al. Plant Physiol, 2008 Sep. PMID 18633119, Free PMC Article
  4. AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. Ferro M, et al. Mol Cell Proteomics, 2010 Jun. PMID 20061580, Free PMC Article
  5. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. PAB directly interacts with the nucleus-encoded gamma subunit and functions downstream of chaperonin 60-mediated CF1gamma subunit folding to promote its assembly into the catalytic core.
    Title: PAB is an assembly chaperone that functions downstream of chaperonin 60 in the assembly of chloroplast ATP synthase coupling factor 1.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001203979.1
NM_001342253.1
NM_119570.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in chloroplast proton-transporting ATP synthase complex assembly IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in chloroplast stroma HDA PubMed 
located_in chloroplast stroma IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
cyclin delta-3
NP_001190908.1
  • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G23370.1).
NP_001320131.1
  • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G23370.1); Has 75 Blast hits to 73 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
NP_567951.1
  • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G23370.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    16326883..16330224 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_119570.4 → NP_567951.1  cyclin delta-3 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_567951.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O49495, Q94JY0
    UniProtKB/TrEMBL
    A0A178V1V1, A0A5S9XYI0, A0A654FVC4

  2. NM_001203979.1 → NP_001190908.1  cyclin delta-3 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190908.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654FVC4, F4JJY7

  3. NM_001342253.1 → NP_001320131.1  cyclin delta-3 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q3E7I4
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q94JY0.1

Gene LinkOut

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