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EMB2758 Tetratricopeptide repeat (TPR)-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829546, updated on 18-Sep-2024

Summary

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Official Symbol
EMB2758
Official Full Name
Tetratricopeptide repeat (TPR)-like superfamily protein
Primary source
TAIR:AT4G33990
Locus tag
AT4G33990
See related
Araport:AT4G33990
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
embryo defective 2758; F17I5.180; F17I5_180
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Genomic context

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See EMB2758 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
2
Sequence:
Chromosome: 4; NC_003075.7 (16289623..16292916, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene membrane insertase, putative (DUF1685) Neighboring gene abscisic acid responsive elements-binding factor 3 Neighboring gene Class I glutamine amidotransferase-like superfamily protein Neighboring gene 3-methylcrotonyl-CoA carboxylase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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NM_119561.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within embryo development ending in seed dormancy NAS
Non-traceable Author Statement
more info
  
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Tetratricopeptide repeat (TPR)-like superfamily protein
NP_567948.1
  • embryo defective 2758 (EMB2758); INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: mitochondrion; EXPRESSED IN: shoot apex, embryo; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G30700.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    16289623..16292916 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001342245.1 → NP_001329766.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UW03, A0A1P8B8P9

  2. NM_119561.2 → NP_567948.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_567948.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O81767
    UniProtKB/TrEMBL
    A0A178UXG8, A0A7G2F331
    Conserved Domains (5) summary
    TIGR00756
    Location:118 → 152
    PPR; pentatricopeptide repeat domain (PPR motif)
    sd00004
    Location:520 → 546
    PPR; PPR repeat [structural motif]
    pfam01535
    Location:416 → 445
    PPR; PPR repeat
    pfam13041
    Location:516 → 564
    PPR_2; PPR repeat family
    pfam14432
    Location:689 → 813
    DYW_deaminase; DYW family of nucleic acid deaminases
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O81767.2

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