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RSL2 ROOT HAIR DEFECTIVE 6-LIKE 2 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829531, updated on 18-Sep-2024

Summary

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Official Symbol
RSL2
Official Full Name
ROOT HAIR DEFECTIVE 6-LIKE 2
Primary source
TAIR:AT4G33880
Locus tag
AT4G33880
See related
Araport:AT4G33880
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F17I5.70; F17I5_70; ROOT HAIR DEFECTIVE 6-LIKE 2
Summary
RSL2 was expressed concurrently with RSL4 and its expression was controlled by RHD6 and RSL1. Required for root-hair growth.
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Genomic context

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See RSL2 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
5
Sequence:
Chromosome: 4; NC_003075.7 (16239363..16241169, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Ribosomal protein S14p/S29e family protein Neighboring gene Peroxidase superfamily protein Neighboring gene miscRNA Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator. Rymen B, et al. Plant Physiol, 2017 Mar. PMID 28167701, Free PMC Article
  2. A basic helix-loop-helix transcription factor controls cell growth and size in root hairs. Yi K, et al. Nat Genet, 2010 Mar. PMID 20139979
  3. The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity. Heim MA, et al. Mol Biol Evol, 2003 May. PMID 12679534
  4. Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses. Efroni I, et al. Dev Cell, 2013 Feb 25. PMID 23449474, Free PMC Article
  5. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_119546.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of DNA-templated transcription TAS
Traceable Author Statement
more info
 PubMed 
acts_upstream_of_or_within response to auxin IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within root hair initiation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
ROOT HAIR DEFECTIVE 6-LIKE 2
NP_195114.2
  • ROOT HAIR DEFECTIVE 6-LIKE 2 (RSL2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: root hair initiation, response to auxin stimulus, cell growth, regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT2G14760.1); Has 3067 Blast hits to 2987 proteins in 166 species: Archae - 0; Bacteria - 15; Metazoa - 165; Fungi - 32; Plants - 2687; Viruses - 0; Other Eukaryotes - 168 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    16239363..16241169 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_119546.3 → NP_195114.2  ROOT HAIR DEFECTIVE 6-LIKE 2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_195114.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O81756, Q84WK0, Q8S3D3
    UniProtKB/TrEMBL
    A0A178V243, A0A5S9XYD8
    Conserved Domains (1) summary
    cd11454
    Location:273 → 335
    bHLH_AtIND_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana protein INDEHISCENT (IND) and similar proteins
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q84WK0.1

Gene LinkOut

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