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Cysteine proteinases superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829502, updated on 18-Sep-2024

Summary

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Official Full Name
Cysteine proteinases superfamily protein
Primary source
TAIR:AT4G33620
Locus tag
AT4G33620
See related
Araport:AT4G33620
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T16L1.110; T16L1_110
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Genomic context

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Location:
chromosome: 4
Exon count:
17
Sequence:
Chromosome: 4; NC_003075.7 (16147594..16152956)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene glycine-rich protein Neighboring gene vacuole protein Neighboring gene UvrB/UvrC domain protein (DUF3506) Neighboring gene ncRNA Neighboring gene costars family protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Two SUMO Proteases SUMO PROTEASE RELATED TO FERTILITY1 and 2 Are Required for Fertility in Arabidopsis. Liu L, et al. Plant Physiol, 2017 Dec. PMID 29066667, Free PMC Article
  2. Arabidopsis thaliana SPF1 and SPF2 are nuclear-located ULP2-like SUMO proteases that act downstream of SIZ1 in plant development. Castro PH, et al. J Exp Bot, 2018 Aug 31. PMID 30053161, Free PMC Article
  3. SUMO-conjugating and SUMO-deconjugating enzymes from Arabidopsis. Colby T, et al. Plant Physiol, 2006 Sep. PMID 16920872, Free PMC Article
  4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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NM_001342223.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables SUMO-specific endopeptidase activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within embryo development ending in seed dormancy IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within megagametogenesis IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within microgametogenesis IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in protein desumoylation ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Cysteine proteinases superfamily protein
NP_001320126.1
  • Cysteine proteinases superfamily protein; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Peptidase C48, SUMO/Sentrin/Ubl1 (InterPro:IPR003653); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT1G09730.2); Has 1439 Blast hits to 1292 proteins in 201 species: Archae - 0; Bacteria - 0; Metazoa - 715; Fungi - 291; Plants - 261; Viruses - 4; Other Eukaryotes - 168 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    16147594..16152956
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001342223.1 → NP_001320126.1  Cysteine proteinases superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4JJ09, O81879, Q0WKV8
    UniProtKB/TrEMBL
    A0A178UZJ5, A0A384KJM0, A0A654FV59, G8XR47
    Conserved Domains (1) summary
    COG5160
    Location:292 → 516
    ULP1; Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q0WKV8.2

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