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BCA5 beta carbonic anhydrase 5 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829498, updated on 18-Sep-2024

Summary

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Official Symbol
BCA5
Official Full Name
beta carbonic anhydrase 5
Primary source
TAIR:AT4G33580
Locus tag
AT4G33580
See related
Araport:AT4G33580
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
A. THALIANA BETA CARBONIC ANHYDRASE 5; ATBCA5; beta carbonic anhydrase 5; T16L1.70; T16L1_70
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Genomic context

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See BCA5 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
10
Sequence:
Chromosome: 4; NC_003075.7 (16138251..16141624)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein Neighboring gene Wound-responsive family protein Neighboring gene RING/U-box superfamily protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis plastid carbonic anhydrase βCA5 is important for normal plant growth. Weerasooriya HN, et al. Plant Physiol, 2022 Nov 28. PMID 36149291, Free PMC Article
  2. Characterization and expression analysis of genes encoding alpha and beta carbonic anhydrases in Arabidopsis. Fabre N, et al. Plant Cell Environ, 2007 May. PMID 17407539
  3. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
  4. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
  5. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001036707.1
NM_001342222.1
NM_119514.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables carbonate dehydratase activity IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in carbon utilization IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in chloroplast IDA
Inferred from Direct Assay
more info
 PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
beta carbonic anhydrase 5
NP_001031784.1
  • beta carbonic anhydrase 5 (BCA5); FUNCTIONS IN: carbonate dehydratase activity, zinc ion binding; INVOLVED IN: carbon utilization; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbonic anhydrase, prokaryotic-like, conserved site (InterPro:IPR015892), Carbonic anhydrase (InterPro:IPR001765); BEST Arabidopsis thaliana protein match is: beta carbonic anhydrase 6 (TAIR:AT1G58180.4); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_567928.1
  • beta carbonic anhydrase 5 (BCA5); FUNCTIONS IN: carbonate dehydratase activity, zinc ion binding; INVOLVED IN: carbon utilization; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbonic anhydrase, prokaryotic-like, conserved site (InterPro:IPR015892), Carbonic anhydrase (InterPro:IPR001765); BEST Arabidopsis thaliana protein match is: beta carbonic anhydrase 6 (TAIR:AT1G58180.4); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    16138251..16141624
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_119514.4 → NP_567928.1  beta carbonic anhydrase 5 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_567928.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B9DHL2, F4JJ03, O81875, Q94CE3
    UniProtKB/TrEMBL
    A0A178V525, A0A5S9XYA5, A0A654FVP3
    Conserved Domains (1) summary
    PLN03006
    Location:1 → 301
    PLN03006; carbonate dehydratase

  2. NM_001036707.1 → NP_001031784.1  beta carbonic anhydrase 5 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031784.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V525, A0A5S9XYA5
    Conserved Domains (1) summary
    PLN03006
    Location:1 → 302
    PLN03006; carbonate dehydratase

  3. NM_001342222.1 → NP_001328574.1  beta carbonic anhydrase 5 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B9DHL2, F4JJ03, O81875, Q94CE3
    UniProtKB/TrEMBL
    A0A178V525, A0A5S9XYA5, A0A654FVP3
    Conserved Domains (1) summary
    PLN03006
    Location:1 → 301
    PLN03006; carbonate dehydratase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q94CE3.1

Gene LinkOut

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