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ABCI10 ABC transporter family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829483, updated on 18-Sep-2024

Summary

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Official Symbol
ABCI10
Official Full Name
ABC transporter family protein
Primary source
TAIR:AT4G33460
Locus tag
AT4G33460
See related
Araport:AT4G33460
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATNAP13; ATP-binding cassette I10; EMB2751; embryo defective 2751; F17M5.220; F17M5_220
Summary
member of NAP subfamily
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Genomic context

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See ABCI10 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
5
Sequence:
Chromosome: 4; NC_003075.7 (16098070..16100440, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Pectin lyase-like superfamily protein Neighboring gene myb domain protein 69 Neighboring gene SCR-like 22 Neighboring gene uncharacterized protein Neighboring gene histone deacetylase 14

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A Novel Prokaryote-Type ECF/ABC Transporter Module in Chloroplast Metal Homeostasis. Voith von Voithenberg L, et al. Front Plant Sci, 2019. PMID 31736987, Free PMC Article
  2. The Arabidopsis thaliana ABC protein superfamily, a complete inventory. Sánchez-Fernández R, et al. J Biol Chem, 2001 Aug 10. PMID 11346655
  3. Proteomic study of the Arabidopsis thaliana chloroplastic envelope membrane utilizing alternatives to traditional two-dimensional electrophoresis. Froehlich JE, et al. J Proteome Res, 2003 Jul-Aug. PMID 12938931
  4. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
  5. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_119500.6

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables transmembrane transporter activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within chloroplast organization IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within embryo development ending in seed dormancy NAS
Non-traceable Author Statement
more info
  
acts_upstream_of_or_within multicellular organismal-level iron ion homeostasis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in chloroplast envelope HDA PubMed 
located_in chloroplast inner membrane IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
ABC transporter family protein
NP_195072.2
  • ATNAP13; FUNCTIONS IN: transporter activity; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: P-glycoprotein 12 (TAIR:AT1G02530.1); Has 407040 Blast hits to 369976 proteins in 3957 species: Archae - 7271; Bacteria - 322720; Metazoa - 9258; Fungi - 6631; Plants - 5055; Viruses - 23; Other Eukaryotes - 56082 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    16098070..16100440 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_119500.6 → NP_195072.2  ABC transporter family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_195072.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8H1R4, Q9SZC3
    UniProtKB/TrEMBL
    A0A178UWU4, A0A5S9XY83, A0A654FV70
    Conserved Domains (1) summary
    cd03225
    Location:41 → 244
    ABC_cobalt_CbiO_domain1; First domain of the ATP-binding cassette component of cobalt transport system
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8H1R4.1

Gene LinkOut

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