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Vacuolar import/degradation, Vid27-related protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829477, updated on 18-Sep-2024

Summary

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Official Full Name
Vacuolar import/degradation, Vid27-related protein
Primary source
TAIR:AT4G33400
Locus tag
AT4G33400
See related
Araport:AT4G33400
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F17M5.160; F17M5_160
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Genomic context

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Location:
chromosome: 4
Exon count:
2
Sequence:
Chromosome: 4; NC_003075.7 (16077898..16080721, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene dimethylallyl, adenosine tRNA methylthiotransferase Neighboring gene WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like protein (DUF827) Neighboring gene SIGNAL PEPTIDE PEPTIDASE-LIKE 1 Neighboring gene Peroxidase superfamily protein Neighboring gene BRI1-associated receptor kinase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. DEFECTIVE EMBRYO AND MERISTEMS genes are required for cell division and gamete viability in Arabidopsis. Lee CH, et al. PLoS Genet, 2021 May. PMID 33999950, Free PMC Article
  2. Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase. Van Leene J, et al. Nat Plants, 2019 Mar. PMID 30833711
  3. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
  4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. DEFECTIVE EMBRYO AND MERISTEMS genes are required for cell division and gamete viability in Arabidopsis.
    Title: DEFECTIVE EMBRYO AND MERISTEMS genes are required for cell division and gamete viability in Arabidopsis.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_119494.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in nuclear envelope IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
Vacuolar import/degradation, Vid27-related protein
NP_195066.1
  • Vacuolar import/degradation, Vid27-related protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cytosol, nucleus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), Vacuolar import/degradation, Vid27-related (InterPro:IPR013863); BEST Arabidopsis thaliana protein match is: Vacuolar import/degradation, Vid27-related protein (TAIR:AT3G19240.1); Has 271 Blast hits to 271 proteins in 130 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 139; Plants - 79; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    16077898..16080721 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_119494.4 → NP_195066.1  Vacuolar import/degradation, Vid27-related protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_195066.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UZ92, A0A5S9XY80, Q9SZB7
    Conserved Domains (1) summary
    COG5167
    Location:175 → 625
    VID27; Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Nucleotide Protein
Heading Accession and Version

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