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AP2/B3-like transcriptional factor family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829464, updated on 18-Sep-2024

Summary

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Official Full Name
AP2/B3-like transcriptional factor family protein
Primary source
TAIR:AT4G33280
Locus tag
AT4G33280
See related
Araport:AT4G33280
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F17M5.40; F17M5_40
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Genomic context

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Location:
chromosome: 4
Exon count:
4
Sequence:
Chromosome: 4; NC_003075.7 (16047134..16049390, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Transducin family protein / WD-40 repeat family protein Neighboring gene Transducin family protein / WD-40 repeat family protein Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene ADR1-like 1 Neighboring gene ncRNA Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article
  2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_119482.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in plant-type vacuole HDA PubMed 

General protein information

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Preferred Names
AP2/B3-like transcriptional factor family protein
NP_195054.2
  • AP2/B3-like transcriptional factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: vacuole; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT3G18990.1); Has 674 Blast hits to 576 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 674; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    16047134..16049390 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001342210.1 → NP_001327989.1  AP2/B3-like transcriptional factor family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B393, A0A654FVE8

  2. NM_001342209.1 → NP_001327990.1  AP2/B3-like transcriptional factor family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B3A7

  3. NM_119482.4 → NP_195054.2  AP2/B3-like transcriptional factor family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_195054.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8RYD1, Q9SZA5
    UniProtKB/TrEMBL
    A0A5S9XY95, A0A654FVE8
    Conserved Domains (1) summary
    cd10017
    Location:223 → 319
    B3_DNA; Plant-specific B3-DNA binding domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8RYD1.1

Gene LinkOut

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